LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca10g04333	ATGGCTTCCTTAACCTTTGTTATCCTTACACTTGTCTTTCTTCATGTTTTCTTAGCTTTTGCAAACGTTAACCTCAGTTCAACACTCTCTACTAATGACAACCATGCATGGCTTTCACCTTCAGGTGAATTTGCTTTTGGATTTCGCCAACTTAGTGGCACAAGCCACTTCATTGTTGCCATCTGGTATGACAAAATACCAGACAAGACCATTGTTTGGAATGCCAAAGCAAATGATGACATTGCAGAAGCCCCAACTGGATCACAGGTTCACCTCACATCAGAAGGGCTAATACTGACAAGTCCTGAAAAGGTGACTATATGGATGGCACGACCAGGTGGTGTTGTTTCCTTTGGAGCTATGCTTGACACTGGGAACTTTGTTCTTGCAAATGGGGAATCTACTTTTGTGTGGGAAAGTTTCAAGAATCCCACTGAAACATTGCTCCCTAACCAATCTCTAAGTTTAGATGGCAAGCTAACTTCTAGAATCACAGAGACCAATTACACAAGAGGAAGGTTCCAACTTTATTTTCAAGATGGTAGTGTCTTCCTTTGTTCCCTTGGTTGGCCTTCTCAATTTCGTTATGACCCATATTATGCATTTGATGCCTCTGGTTCTAGTTCAAAAATAGTGTTCAATAATTCAGGGGATATTTACATAGAGAGAGCGAATGGTACTAGAGTCCAACCTCATGGTGCAAAATGGGATACTAATGTAATTCTTGATCCTATGGGGTATTACTATAGAGCAACACTTGACTTCCATGGAGTTTTCACACAGTATTCTCATCCAAGGGGCTCCACTTCCCAACCAGGTTGGGAAATTGTGAGGTATGTTCCTAACGACATATGTGCTGCAATAAACAGAACACTTGGTAGTGGTCCTTGTTGGTATAATAGCTACTGCTCCATGAAAAGTGACAGGCCAACATGTGAATGCCCATATGGGTATTCACTAGTAGATCCAAGTAATGAATTTGGTGGGTGCCAACCCAAATTTACCCTTGGTTGTGGAGCTGATATTGAAGGATTGCAAGGAAGGCCAGAAGAACTATATGAATTGCATGAATCAAGTGATAGGGACTTTATGTTTGCAGAATATGACATAATACAACCTTACTCTCTAAGTGAATGTAAACAATCTTGCTTGCAAGATTGCATGTGTGCTGCTGCTTCTTTCTCTAATAATGGTTGTTACAAGAAAAGATTACCCCTTATTAATGGAAAAATAGGTCCACTTACATATTTGATCTTTACCAAAACAAGAGTTCATCCTCTGACTAGTGCAAACAAGGGACTCCCTACTCTTCCTGACTCAAGGAAAGAAGATCAAGCTAAGTCAATTCTTATGGGGACACTTATTGGTTCCCTTGTCGTTAATAGTATACTACTGGTTACTGTTGTTTTGGTGCTTCTCTTGAAGCCAAAAAGGATTGTCCAAGTTGCAAGTCTTTTGGAAACAAAATTGCATTCATTCACTTATGAAGTACTGAAAAATGCCACACAAGATTTTAGTGAAGAACTAGGGAGGGGTTCCTTTGGCATTGTTTACAAAGGTACTCTAGACTCAGTTTTGTCTCATAATGTGGTTGCTGTCAAGAGATTGGACAGGTTAGGACCAGAAGGAGAGAAGGAATTTAAGACTGAGTTGACTGCTATTGGCAAAACCTATCACAAAAATCTGGTACAGTTGATTGGATTTTGTGATGAGGGAATTCACAGACTATTAGTCTATGAGTTCATGAACAATGGTACTCTAGCAGACATCTTATTTGGACAACCCAAACCCATTTGGAATCTAAGGGTTGGATTTGCTTTGGGGATTGCAAAAGGGTTGGTCTACTTACATGAAGAGTGTGACACTCCCATCATTCATTGTGATATAAAACCTCAAAATATACTCATAGATGACCATTTCACTGCAAAGATCTCTGACTTTGGGTTGGCCAAGCTGTTGTTGTCTCACCAAAGTAGAACCAACACCATGATACGAGGAACTAAAGGGTATGTGGCTCCTGAATGGTTCAAGAATGTTCCTGTCACAGTTAAAGTGGATGTTTATAGCTTTGGTGTCATGTTGATGGAAATCATTTGCTGCAGAAGAAATGTGCTGCTGAAGGAGTCTGGGGAGGAAGAGAAGGCAATATTGACAGATTGGGCTTATGATTGCTATATGGAAGGGAGAATAGATGCTCTTCTGGATGATGATGACAAGGGGGCTATGGATGACTATGACAAGTTACAAAGGTGGATAAGGATAGCAATTTGGTGCATCCAAGAGCATCATGAGATAAGGCCAACAATGGGGATGGTCATGCAAATGTTAGAAGGCTCTGTTGAGGTCCCTAATCCACCACCTCCTTATTCCTTCAGTTAG	2379	0.4061	MASLTFVILTLVFLHVFLAFANVNLSSTLSTNDNHAWLSPSGEFAFGFRQLSGTSHFIVAIWYDKIPDKTIVWNAKANDDIAEAPTGSQVHLTSEGLILTSPEKVTIWMARPGGVVSFGAMLDTGNFVLANGESTFVWESFKNPTETLLPNQSLSLDGKLTSRITETNYTRGRFQLYFQDGSVFLCSLGWPSQFRYDPYYAFDASGSSSKIVFNNSGDIYIERANGTRVQPHGAKWDTNVILDPMGYYYRATLDFHGVFTQYSHPRGSTSQPGWEIVRYVPNDICAAINRTLGSGPCWYNSYCSMKSDRPTCECPYGYSLVDPSNEFGGCQPKFTLGCGADIEGLQGRPEELYELHESSDRDFMFAEYDIIQPYSLSECKQSCLQDCMCAAASFSNNGCYKKRLPLINGKIGPLTYLIFTKTRVHPLTSANKGLPTLPDSRKEDQAKSILMGTLIGSLVVNSILLVTVVLVLLLKPKRIVQVASLLETKLHSFTYEVLKNATQDFSEELGRGSFGIVYKGTLDSVLSHNVVAVKRLDRLGPEGEKEFKTELTAIGKTYHKNLVQLIGFCDEGIHRLLVYEFMNNGTLADILFGQPKPIWNLRVGFALGIAKGLVYLHEECDTPIIHCDIKPQNILIDDHFTAKISDFGLAKLLLSHQSRTNTMIRGTKGYVAPEWFKNVPVTVKVDVYSFGVMLMEIICCRRNVLLKESGEEEKAILTDWAYDCYMEGRIDALLDDDDKGAMDDYDKLQRWIRIAIWCIQEHHEIRPTMGMVMQMLEGSVEVPNPPPPYSFS.	793

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca10g04333	792	SMART	serkin_6	503	752	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca10g04333	792	FunFam	G-type lectin S-receptor-like serine/threonine-protein kinase LECRK1	19	142	-	-
	Seca10g04333	792	Pfam	D-mannose binding lectin	70	159	IPR001480	-
	Seca10g04333	792	ProSitePatterns	Protein kinases ATP-binding region signature.	509	534	IPR017441	GO:0005524
	Seca10g04333	792	Gene3D	Phosphorylase Kinase; domain 1	470	581	-	-
	Seca10g04333	792	ProSiteProfiles	Bulb-type lectin domain profile.	22	142	IPR001480	-
	Seca10g04333	792	PIRSF	SRK	1	792	IPR024171	GO:0004674
	Seca10g04333	792	SUPERFAMILY	alpha-D-mannose-specific plant lectins	57	186	IPR036426	-
	Seca10g04333	792	Gene3D	-	17	142	IPR036426	-
	Seca10g04333	792	Gene3D	-	145	273	IPR036426	-
	Seca10g04333	792	SUPERFAMILY	Protein kinase-like (PK-like)	486	777	IPR011009	-
	Seca10g04333	792	Pfam	Protein kinase domain	506	774	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca10g04333	792	FunFam	G-type lectin S-receptor-like serine/threonine-protein kinase	582	784	-	-
	Seca10g04333	792	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	624	636	IPR008271	GO:0004672\|GO:0006468
	Seca10g04333	792	FunFam	S-receptor-like serine/threonine-protein kinase	475	581	-	-
	Seca10g04333	792	ProSiteProfiles	Protein kinase domain profile.	503	792	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca10g04333	792	PANTHER	G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5	28	788	-	-
	Seca10g04333	792	SMART	blect_4	28	144	IPR001480	-
	Seca10g04333	792	Gene3D	Transferase(Phosphotransferase) domain 1	582	782	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca10g04333	Seca-Chr10	98157052	98159430	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca10g04333	407	782	Receptor kinase-like Gene Family	AT1G56120	39.844	1.21e-69	244

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_SD-2b	Seca10g04333		Pkinase	9e-45	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca10g04333	-		-	gmx:100775269	1058.51