Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g04326 ATGCCTGCCATGAAAAAGAATTCTGAGCAGACTCGTTTTGGATCTATATTCAACAAGTTGGTGAAGGAGCTTGGGGAACCTGTTGACTTTAAACTTCCAGATTGGTTTAATAAGTCGAAGTCAATGCCATACACCCATATAAAACGCAATATATATCTCGCGAAGAAGGTCAAGAGACGGTTTGAGGATGATGGCATATTTTGTTCCTGCACAAGTTCACCTGGATCTACTGATGTATGTGGTAGAGATTGCCACTGTGGGATGCTTCTGTCTAGCTGTTCTTCAGGCTGTAAATGTGGGAGCTCCTGTCTTAACAAACCATTTCAGCAACGTCCTGTGAAAAAGATGAAATTGGTTCAGACTGAGAAGTGTGGTTCTGGAATTGTTGCGGATGAAGATATCAAGCTTGGGGAGTTTGTTATTGAATATGTTGGAGAAGTCATTGATGACAAAACATGTGAAGAAAGGCTTTGGAATATGAAACACCGTGGGGAAACAAACTTTTACTTATGTGAAATCAATCGAGATATGGTGATAGATGCAACATATAAGGGAAACAAATCAAGATATATCAATCATAGTTGCTGCCCCAATACTGAGATGCAGAAATGGATAATTGATGGTGAAACAAGAATTGGCATATTTGCAACTCGCGACATACAAAAGGGCGAGCATCTGACTTATGATTACCAGTTTGTTCAATTTGGTGCAGATCAAGATTGCCACTGTGGTGCTGCTGGCTGTAGGCGTAAGCTGGGTGTGCGACCTAACAAGCCTAAAATGTCTTCAGATGCCGCATTAAAATTAGTTGCTTATCAGGTTTGTCAAAATGGAGGCTTGCAAATTGGAAGTTCTCGTGTTGTTGACAAATCGAAGTGCTTACACAATTGCATTGGTGAAATTATTAGGATAAAACAACTTGGAAATATGAGGTTTGGAATTATTAAATGGTTTGATAAATATTCCCGAAAACACTCGATCATGTTTGAGGACGGTTGTGTTGAAATATATGACATGTCAAAAGAAGATTGGGAACTAGTGAGATGA 1047 0.3945 MPAMKKNSEQTRFGSIFNKLVKELGEPVDFKLPDWFNKSKSMPYTHIKRNIYLAKKVKRRFEDDGIFCSCTSSPGSTDVCGRDCHCGMLLSSCSSGCKCGSSCLNKPFQQRPVKKMKLVQTEKCGSGIVADEDIKLGEFVIEYVGEVIDDKTCEERLWNMKHRGETNFYLCEINRDMVIDATYKGNKSRYINHSCCPNTEMQKWIIDGETRIGIFATRDIQKGEHLTYDYQFVQFGADQDCHCGAAGCRRKLGVRPNKPKMSSDAALKLVAYQVCQNGGLQIGSSRVVDKSKCLHNCIGEIIRIKQLGNMRFGIIKWFDKYSRKHSIMFEDGCVEIYDMSKEDWELVR. 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g04326 348 SMART PostSET_3 237 253 IPR003616 -
Seca10g04326 348 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 37 291 IPR025787 -
Seca10g04326 348 ProSiteProfiles AWS domain profile. 63 112 IPR006560 GO:0005634|GO:0042054
Seca10g04326 348 FunFam Histone-lysine N-methyltransferase 30 269 - -
Seca10g04326 348 PANTHER SET DOMAIN PROTEINS 29 268 - -
Seca10g04326 348 ProSiteProfiles Post-SET domain profile. 237 253 IPR003616 -
Seca10g04326 348 ProSiteProfiles SET domain profile. 114 231 IPR001214 GO:0005515
Seca10g04326 348 Gene3D SET domain 33 269 IPR046341 -
Seca10g04326 348 SMART shorttest3 63 113 IPR006560 GO:0005634|GO:0042054
Seca10g04326 348 SUPERFAMILY SET domain 35 243 IPR046341 -
Seca10g04326 348 SMART set_7 114 237 IPR001214 GO:0005515
Seca10g04326 348 Pfam SET domain 125 230 IPR001214 GO:0005515
Seca10g04326 348 CDD SET_ASHR3-like 115 253 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g04326 Seca-Chr10 97904971 97915580 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g04326 87 249 C2H2 Transcription Factor Family AT2G23740 34.426 1.35e-22 97.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Seca10g04326 SET 2.7e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g04326 - - gmx:100808183 665.611