Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g04321 ATGGCTTCCTTAACCTCTCTTATCCTTACACTTGTCTTTCTTCATGTTTTCTTAGCTTTTGCAAACGTTAACCTCAGTTCAACACTCTCCACTAATGACAACCATGCATGGCTTTCACCTTCAGCTGAATTTGCTTTTGGATTTCGCCAACTTAGTGGCACAAGCCACTTCATTGTTGCCATCTGGTTTGACACAATACCAAACAAGACCATCGTTTGGAATGCCAAAGCAAATGATGACATTGCAGAAGCACCAACTGGATCACAGGTTCACCTCACATCAGAAGGGCTAATACTGACAAGTCCTGAAAATGTGACTATATGGATGGCACAACCACAACCAGGTGATGTTGTTTCCTTTGGAGCTATGCTTGACACTGGGAACTTTATTCTTGCAAATAGGGAATATAATTTTGTGTGGGAAAGTTTCAAGTATCCCACTGACACTTTGCTCCCTAACCAAACTCTAGAGGAAAATGGCAAGCTAACTTCTAGAATGACAGAGACCAATTACACAAGAGGAAGGTTCCAACTTTATTTTCAAGATGGTAGTGTCTTCCTTTGTTCCCTTGGTTGGCCTTCTCAACTTCGTTATGATCCTTATTATGCATTTGGTGCCTCTGGCTCTAGATCAAAATTAGTGTTCAATAATTCAGGGGATATTTACATAGAGAGAACGGATGGTACTAGAGTCCAACCTCATGGTGCAAAATGGGATACTAATGTAACTCTTGATCCTAAGGTGTATTACTATAGGGCAACAGTTGACTTCCATGGAGTTTTCACACAGTATTCTCATCCAAGGGGCTCCACTTCCCAACCAGGTTGGGAAATTGTGAGGCCAACATGTGAATGCCCATATGGGTATTCACTAGTAGATCCAAGTAATGAATTTGGTGGGTGCCAACCCAAATTTACCCTTGGTTGTGGAGCTGATATGGAAGGATTGCAAGGAAGGCCAGAAGAACTATATGAATTGCATGAAACAAGTGATGGGGATTTTTATTTTGCAGAATATGACATAATACAACCTTACTCTCTAAGTGAATGCAAACAATCTTGCTTGCAAGATTGCATGTGTGCTGCTGTTTCCTTCTCTAATAATGGTTGTTACAAGAAAAGATTACCCCTTACTAATGGAAGATTAGCTACAATTCCACATTTGGTCTTTACCAAAATAAGAGTTCATCCTCTGACTAGTGCAAACAAGGGACTCCCTACTCTTCCTGACTCAAGGAAAGAAGATCAAGCTAAGCCAATTCTTATGGGGACACTTATTGGCTCCCTTGTCGTTAATAATATACTACTGGTTACTGTTGTTTTGGTGCTTCTCTTGAAGCCAAAAAGGATTGTCCAAGTTGCAAGTCTTTTGGAAACAAAATTGCATTCATTCACTTATGAAGTACTGAAAAATGCCACACAGGATTTTAGTGAAGAACTAGGGAGGGGTTCCTTTGGCATTGTTTACAAAGGTACTCTAGACTCAGTTTTGTCTCATAATGTAGTTGCTGTCAAGAGATTGGACAGGTTAGGACCAGAAGGAGAGAAGGAATTTAAGACTGAGTTGACTGCTATTGGCAAAACCTATCACAAAAATCTGGTACAGTTGATTGGATTTTGTGATGAGGGAATTCACAGACTATTAGTCTATGAGTTCATGAACAATGGTACTCTAGCAGACATCTTATTTGGACAACCCAAACCCATTTGGAATCTAAGGGTTGGATTTGCTTTGGGGATTGCAAGAGGGTTGGTGTACTTACATGAAGAGTGTGACACTCCTATAATTCATTGTGATATAAAACCTCAAAATATACTCATAGATGACCATTTCACTGCAAAGATCTCTGACTTTGGGTTGGCCAAGCTGTTGTTGTCTCACCAAAGTAGAACCAACACCATGATAAGAGGAATTAAAGGGTATGTGGCTCCTGAATGGTTCAAGAATGTGCCTGTGACAGTTAAAGTGGATGTTTATAGCTTTGGTGTCATGTTGCTGGAAATCATTTGCTGCAGAAGAAATGTGCTGCTGAAGGAGTCTGGGGAGGAAGAGAAGGCAATATTGACAGATTGGGCTTCTGATTGCTATATGGAAGGGAGAATAGATGCTCTTCTGGATGATGATGACAAAGGGTCTATGGATGACTATGACAAGTTACAAAGGTGGATAAAGATAGCAATTTGGTGCATCCAAGAGCATCATGAGATAAGGCCAACAATGGGAATGGTCATGCAAATGCTAGAAGGCTCTGTTGAGGTCCTGTTGGGATTTGATTTCCAAATTGTTCGAATTCCCAAAATGTTATGA 2307 0.4044 MASLTSLILTLVFLHVFLAFANVNLSSTLSTNDNHAWLSPSAEFAFGFRQLSGTSHFIVAIWFDTIPNKTIVWNAKANDDIAEAPTGSQVHLTSEGLILTSPENVTIWMAQPQPGDVVSFGAMLDTGNFILANREYNFVWESFKYPTDTLLPNQTLEENGKLTSRMTETNYTRGRFQLYFQDGSVFLCSLGWPSQLRYDPYYAFGASGSRSKLVFNNSGDIYIERTDGTRVQPHGAKWDTNVTLDPKVYYYRATVDFHGVFTQYSHPRGSTSQPGWEIVRPTCECPYGYSLVDPSNEFGGCQPKFTLGCGADMEGLQGRPEELYELHETSDGDFYFAEYDIIQPYSLSECKQSCLQDCMCAAVSFSNNGCYKKRLPLTNGRLATIPHLVFTKIRVHPLTSANKGLPTLPDSRKEDQAKPILMGTLIGSLVVNNILLVTVVLVLLLKPKRIVQVASLLETKLHSFTYEVLKNATQDFSEELGRGSFGIVYKGTLDSVLSHNVVAVKRLDRLGPEGEKEFKTELTAIGKTYHKNLVQLIGFCDEGIHRLLVYEFMNNGTLADILFGQPKPIWNLRVGFALGIARGLVYLHEECDTPIIHCDIKPQNILIDDHFTAKISDFGLAKLLLSHQSRTNTMIRGIKGYVAPEWFKNVPVTVKVDVYSFGVMLLEIICCRRNVLLKESGEEEKAILTDWASDCYMEGRIDALLDDDDKGSMDDYDKLQRWIKIAIWCIQEHHEIRPTMGMVMQMLEGSVEVLLGFDFQIVRIPKML. 769
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g04321 768 SUPERFAMILY alpha-D-mannose-specific plant lectins 57 187 IPR036426 -
Seca10g04321 768 FunFam S-receptor-like serine/threonine-protein kinase 446 552 - -
Seca10g04321 768 Gene3D Phosphorylase Kinase; domain 1 441 552 - -
Seca10g04321 768 Pfam PAN-like domain 343 371 IPR003609 -
Seca10g04321 768 ProSitePatterns Serine/Threonine protein kinases active-site signature. 595 607 IPR008271 GO:0004672|GO:0006468
Seca10g04321 768 Pfam Protein kinase domain 477 745 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g04321 768 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 553 754 - -
Seca10g04321 768 SUPERFAMILY Protein kinase-like (PK-like) 457 748 IPR011009 -
Seca10g04321 768 ProSiteProfiles Protein kinase domain profile. 474 755 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g04321 768 Gene3D - 17 144 IPR036426 -
Seca10g04321 768 PIRSF SRK 1 279 IPR024171 GO:0004674
Seca10g04321 768 PIRSF SRK 269 757 IPR024171 GO:0004674
Seca10g04321 768 Gene3D - 145 273 IPR036426 -
Seca10g04321 768 SMART blect_4 28 146 IPR001480 -
Seca10g04321 768 ProSitePatterns Protein kinases ATP-binding region signature. 480 505 IPR017441 GO:0005524
Seca10g04321 768 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 28 753 - -
Seca10g04321 768 Pfam D-mannose binding lectin 70 161 IPR001480 -
Seca10g04321 768 Gene3D Transferase(Phosphotransferase) domain 1 553 754 - -
Seca10g04321 768 ProSiteProfiles Bulb-type lectin domain profile. 22 144 IPR001480 -
Seca10g04321 768 SMART serkin_6 474 723 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g04321 Seca-Chr10 97753687 97756093 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g04321 423 753 Receptor kinase-like Gene Family AT1G56120 41.691 8.31e-68 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Seca10g04321 Pkinase 1.4e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g04321 - - gmx:100775269 961.444