Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g04313 ATGCATCTTAGTTCGGAACCTGATGTGGTTGTAGAGGAGGTTGATCAACAACATACAGAGTTTCTTATTCTGGCTAATGATGGAATATGGAAGGTGATGTCAAACCAAGAAGCAGTGGATTCTATTAGACAAATAAAGGATGCTCAGGCAGCAGCAAAACATTTGATTGAAGAGGCTATTTCCAAGAAAAGTAAGGATGACATATCCTGCATAGTTGTGAAGTTCCAATGA 231 0.3896 MHLSSEPDVVVEEVDQQHTEFLILANDGIWKVMSNQEAVDSIRQIKDAQAAAKHLIEEAISKKSKDDISCIVVKFQ. 77
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g04313 76 ProSiteProfiles PPM-type phosphatase domain profile. 1 75 IPR001932 -
Seca10g04313 76 PANTHER PROTEIN PHOSPHATASE 3 75 IPR015655 GO:0004722|GO:0006470
Seca10g04313 76 Pfam Protein phosphatase 2C 3 68 IPR001932 -
Seca10g04313 76 CDD PP2Cc 2 75 IPR001932 -
Seca10g04313 76 Gene3D - 1 76 IPR036457 -
Seca10g04313 76 SUPERFAMILY PP2C-like 2 75 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g04313 Seca-Chr10 97670992 97671416 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g04313 1 76 PP2C-type Phosphatase Gene Family AT4G28400 72.368 1.34e-34 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g04313 K17506 - gmx:100819846 117.857