Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g04301 ATGGTTCAGACACTATCCTCCTCCTCTTCTTTCAGCTACGGATTCACCTACCATGTGTTCCTCAACTTCAAAGGCATAGACACTCGATTGGGTTTTACTGGCAATCTCTACAAAGCTCTATGTGACAAGGGAATCCACACCTTCATTGATGATGAAAAGCTTCAAAGAGGAGATGCAATCACATCATTACTTGTTAAGGCCATTGAAGAGTCCAGGATTGCCATCACTCTGTTCTCTAACAACTATGCTTCTTCATTGGATGAACTTGTCAACATCATTGACCTCATCAAGGCAAAAGGTCGATTGGTTTTACCCATATTTTATGATGTGGATCCTTCTCATGTGCGACATCATACATGGAGTTATGGTGAAGCACTTGCCAATCATGTGGAGAGGTTTAGAAATAACAAGGAAAAGTTCAAGGATAACATGGAGAGGAATGAATATGAACATGAGTTTATTTGGAAGATAGTTGAAGAGGTCTCCAACAAGATTAATCGCAATCCTTTACATGTTGCGGATTACCCTGTTGGACTAGAGTCTCAAGTGCTTAAAGTAAAGTCACTTATGGATGTTGGATCTGGTGATGGAGTCCACATGGTAGGGATTTATGGAATTGGTGGAATGGGCAAAACAACACTAGCAAGAGCACTTTATAATTTGATTGCTGACCAATTTGAAGGTTTATGTTTTCTTCATAATGTGAGAGAAAATTCAACTAAACATGGCTTAAAACATCTCCAAGAGAAGCTCCTTGCAAAAACAGTTGGATTGAACATTAAATTAGAAGATGTCAATGAAGGAATTCCAATAATAAAGCAAAGGTTGCATCGGAAGGTTCTTTTGATTCTTGATGATGTTGACAAACTGAATCAGTTGCAAGTTATGGTTGGAGGATCAGATTGGTTTGGTCTTGGCAGCAGAATCATCATTACCACTCGAGATCAGCATTTGCTAGCAAGTCATGGAATTAAAAGAATGTATGAGGTATTTCAGTTAAATGAGGAAGAAGCTCTTGAATTGTTAAGGTGGAACGCTTTTAAAAATGACAAAGTTGATCCAAGTTACAAGGGCATCTTAAATAATGCTTCTGGCCCTCCATTGACATTGGAAGTAATAGGTTCCAACTTGTATGGAAAAACTATAGAAGAATGGAAATTAACATTGGATCTGTATGAAAGGATTCCTAATAAAGAGATCCAAAAGATACTTAAAATAAGTTTTGATGATTTGGACGAAGATGAGCAAAGTGTTTTTCTTAGCATTGCTTGTTGCTTCAATGGATATGTAATGACAGAGGTTGAAAACATACTTCATGCTCATTATGGTGACTTTGTGAAACATCACATTGGAGTGTTATTTGAAAAATCTCTCATAAAGATTAGTTGCAAAGGTACAATGACATTACATGATTTGATAGAGGATATGGAGCATTTGCCATCTGATTTTCAATCAAGGAACCTGTCTATATTCAAGTTGCCCTTTAGTTGCTTTACATCATTTGAGTGGCCTGGCTTTATGAAGAAGGCAAGTAAGTACATAAATATGAGAGTTTTAAATTTTGACCGCTGTAAATATTTAACACAAGTACCTGATGTATCTGGCCTTCCAAATTTAGAAGAATTTTCATTTCAATTTTGTGAGAATGTAATTACAATTCATAATTCAATTGGCCTCTTGGATAAACTTAAAATCTTGAGTGCTGAAGGTTGTAGCAAGCTTAAGAGTTTTCCACCCCTTAAATTGGCCTCTCTTCAATATCTGGGCCTTTCATATTGCACAAGTCTTGAGAGTTTTCCAGATATATTAGGGAAGATGGAAAACATAGCAGAGCTTAGCTGTGTTATACCTCACTTAAAAGAATTGCCATTTTCATTTCAAAATCATAGTCACCTTCAAAAGTTATTTCTAAGGAGCTGTCGAACTGTTCAGTTACCTAGTAGCATTACCATGATGCCAAAGCTGGCTAAGAATACTGTTGATGCAGAGGGTCTCACATGGTTTGTTAATGTGAAAGAATTAGACCTAAGGGGGAATAATTTCACAATTGTTCCTGAATGTCTTAAAGAATGCCGCTTTTTATGGATACTTGTCTTGGATGATTGCAAGAAACTTCATGAAATTAGAGGGATTCCGCCCAGCTTGAAATATTTATCTGCAATAGACTGTGAATCCTTGACTTCCTCATGTAGAAACATGCTGCTAAATCAGACTAACAGGAATTGCATGAGGCTGGAAACACAAGGTTTCTTTTTGCCAGGAACAAGGATTCCAGAGTGGTTTGAGCACCAGAACAAGGGACATTCAACTTCTTTCTGGTTTCATGACAAGTTCCCTGACATTGTTCTTTGTGTTGTTTATCCTTATCCATTGACATGGGAGTTTTCTCATAATGTAGCTGTGTTCATCAATGGTGAGAGGATTTTTGAAATGAAGAAGTGGCCAGGTCATATCCTTCTTCATATGCTAACAAAAGAATTATGCCATAATCTGGATGAAGTACTTTTAGAAAATGAGTGGAACCAAGTGGAGGTTGTTGTGATAGGCAATTTATTCAACAATCAAATTAGCATAGATGTTGGAATCCATGTACTCAAAGAGAACAGTAGCATTGAGGATATTCAATTCACCAATCCTTATAAAAAAGAGAAGATTGGACATGAACCTTCCACCTCTTCAAGAGATGGCATTTGCACTATTTCGGTTGATGTCAGCATTGGGAGAATGATATTCTTCTACTTGGCAGGAGTTTGTGAAAATTGTGTGGTATTGTTGTACACCAAGATACTATCTCCACTTGAAGTGCAACAAATGGACAAAGGTTTAAATCCTACTTCTGCCCCAAGACACAAGCTTTTTGTTAGTTACAACTATAGTGATGATTATGTCAAACGACAAGAATTGAGAAGTCGAAAACAAAAATGA 2925 0.3699 MVQTLSSSSSFSYGFTYHVFLNFKGIDTRLGFTGNLYKALCDKGIHTFIDDEKLQRGDAITSLLVKAIEESRIAITLFSNNYASSLDELVNIIDLIKAKGRLVLPIFYDVDPSHVRHHTWSYGEALANHVERFRNNKEKFKDNMERNEYEHEFIWKIVEEVSNKINRNPLHVADYPVGLESQVLKVKSLMDVGSGDGVHMVGIYGIGGMGKTTLARALYNLIADQFEGLCFLHNVRENSTKHGLKHLQEKLLAKTVGLNIKLEDVNEGIPIIKQRLHRKVLLILDDVDKLNQLQVMVGGSDWFGLGSRIIITTRDQHLLASHGIKRMYEVFQLNEEEALELLRWNAFKNDKVDPSYKGILNNASGPPLTLEVIGSNLYGKTIEEWKLTLDLYERIPNKEIQKILKISFDDLDEDEQSVFLSIACCFNGYVMTEVENILHAHYGDFVKHHIGVLFEKSLIKISCKGTMTLHDLIEDMEHLPSDFQSRNLSIFKLPFSCFTSFEWPGFMKKASKYINMRVLNFDRCKYLTQVPDVSGLPNLEEFSFQFCENVITIHNSIGLLDKLKILSAEGCSKLKSFPPLKLASLQYLGLSYCTSLESFPDILGKMENIAELSCVIPHLKELPFSFQNHSHLQKLFLRSCRTVQLPSSITMMPKLAKNTVDAEGLTWFVNVKELDLRGNNFTIVPECLKECRFLWILVLDDCKKLHEIRGIPPSLKYLSAIDCESLTSSCRNMLLNQTNRNCMRLETQGFFLPGTRIPEWFEHQNKGHSTSFWFHDKFPDIVLCVVYPYPLTWEFSHNVAVFINGERIFEMKKWPGHILLHMLTKELCHNLDEVLLENEWNQVEVVVIGNLFNNQISIDVGIHVLKENSSIEDIQFTNPYKKEKIGHEPSTSSRDGICTISVDVSIGRMIFFYLAGVCENCVVLLYTKILSPLEVQQMDKGLNPTSAPRHKLFVSYNYSDDYVKRQELRSRKQK. 975
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g04301 974 ProSiteProfiles TIR domain profile. 15 165 IPR000157 GO:0007165
Seca10g04301 974 PRINTS Disease resistance protein signature 200 215 - -
Seca10g04301 974 PRINTS Disease resistance protein signature 580 596 - -
Seca10g04301 974 PRINTS Disease resistance protein signature 363 377 - -
Seca10g04301 974 PRINTS Disease resistance protein signature 274 288 - -
Seca10g04301 974 Gene3D Ribonuclease Inhibitor 617 768 IPR032675 -
Seca10g04301 974 Gene3D - 332 412 IPR042197 -
Seca10g04301 974 SMART till_3 16 164 IPR000157 GO:0007165
Seca10g04301 974 Gene3D - 12 163 IPR035897 -
Seca10g04301 974 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 477 602 IPR044974 GO:0006952
Seca10g04301 974 SUPERFAMILY L domain-like 475 728 - -
Seca10g04301 974 Pfam C-JID domain 752 845 IPR045344 -
Seca10g04301 974 SMART AAA_5 197 333 IPR003593 GO:0016887
Seca10g04301 974 Gene3D - 164 325 IPR027417 -
Seca10g04301 974 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 163 421 IPR027417 -
Seca10g04301 974 Gene3D Ribonuclease Inhibitor 456 614 IPR032675 -
Seca10g04301 974 Coils Coil 130 150 - -
Seca10g04301 974 Pfam NB-ARC domain 186 405 IPR002182 GO:0043531
Seca10g04301 974 SUPERFAMILY Toll/Interleukin receptor TIR domain 6 137 IPR035897 -
Seca10g04301 974 Pfam TIR domain 17 167 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g04301 Seca-Chr10 97445034 97450986 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g04301 177 476 WRKY Transcription Factor Family AT5G45050 31.270 4.18e-34 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g04301 - - mtr:25480793 843.188