Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g04294 ATGGCTTCCCTTGCTGCTTCCACAGCAGCTGCTTCCCTTGGCATGTCAGAAATGCTTGGAAACCCCATCAACTTGAGTGGTGCCACAAGGTCAGCCCCATCTCCCTCTACCCCTGCTACCTTCAAAACTGTGGCTCTTTTCTCCAAAAAGAAGGCACCACCACCACCTCCTCCAAAGCAGAAACCTGCTGCTGTTTCTTCTGCCAATGATGAGCTCGCCAAGTGGTATGGTCCTGATAGAAGGATCTTCTTGCCAGATGGTCTCTTGGACCGATCTGAGATCCCAGAGTACTTGACTGGTGAAGTCCCTGGAGACTATGGTTATGACCCATTTCGTCTTAGCAAGAAGCCAGAGGACTTTGCTAAATATCAGGCATATGAATTGATTCATGCCAGATGGGCAATGCTTGGTGCTGCTGGATTCATTATTCCTGAGGCCTTCAACAAATTTGGAGCCAACTGTGGTCCTGAGGCTGTTTGGTTCAAGACTGGAGCTCTGCTTCTTGATGGTGGCACGTTGAACTACTTCGGTAAACCCATCCCCATCAATCTTATTGTTGCTGTAGTTGCTGAGGTTGTTCTTTTAGGAGGTGCAGAGTACTACAGAATTATTAATGGCCTGGTATGCAAATTCCTCAATTTGAACATTTATTTGCAGCCATTGTTAAATGTTAGTATACTCAACCATTTTTTATATCCATAA 702 0.4587 MASLAASTAAASLGMSEMLGNPINLSGATRSAPSPSTPATFKTVALFSKKKAPPPPPPKQKPAAVSSANDELAKWYGPDRRIFLPDGLLDRSEIPEYLTGEVPGDYGYDPFRLSKKPEDFAKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGGTLNYFGKPIPINLIVAVVAEVVLLGGAEYYRIINGLVCKFLNLNIYLQPLLNVSILNHFLYP. 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g04294 233 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 39 205 IPR001344 GO:0009765|GO:0016020
Seca10g04294 233 SUPERFAMILY Chlorophyll a-b binding protein 75 206 - -
Seca10g04294 233 Gene3D Chlorophyll a/b binding protein domain 82 220 - -
Seca10g04294 233 MobiDBLite consensus disorder prediction 22 66 - -
Seca10g04294 233 FunFam Chlorophyll a-b binding protein, chloroplastic 82 219 - -
Seca10g04294 233 MobiDBLite consensus disorder prediction 22 43 - -
Seca10g04294 233 Pfam Chlorophyll A-B binding protein 95 203 IPR022796 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g04294 Seca-Chr10 97326348 97328640 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g04294 11 207 Chloroplast and Mitochondria Gene Families AT4G10340 77.778 5.98e-91 267
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g04294 K08916 - cpap:110818730 362.844
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g04294 10 97326348 97328640 Seca10g04294 10 97326348 97328640 ECH
Seca10g04294 10 97326348 97328640 Seca8g06040 8 154026657 154027788 PCT