Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g04290 ATGGGGCGTTCAGTACTTGTTTTTCTTATCTTCTCTCTACTGGGTTTTGTCTTGAACCCAACATGTGTTTGTGGGAATGATGAGCTTAGAGCACTCTTGGACTTGAAAGCCACTTTGGATCCAGATGGTCAGTTTCTGTCCTCTTGGACCATGAATGGCAACCCATGTAGTGGTTCTTTTGAAGGGGTGGCTTGCAATGAGAAGGGTCAGGTAGCAAATGTTTCTTTGCAGGGAAAAGGTCTCTCTGGCAAGCTATCACCAGCCATTGCTGGGTTGAAACACTTGACAGGACTTTACTTGCATTACAACTCTTTGTATGGAGAGATACCTAGAGAAATTGCTAACTTGACTGAGCTTAGTGATTTGTACTTGAATGTGAATCACTTGTCTGGTGAAATTCCTCATGAGATCGGCAAGATGGAGAATCTACAAGAGAAATCTCCCTTAGAAGATGCTTTATGCAACTATAACTACGATTTTGAACAACCTGATGTTTCTGATTTAATTGCAAGAGTTTTGCAGCTTTGTTATAATCAGTTAACAGGAAGCATACCAACACAGCTTGGTGATTTGAAAAAGCTCAGTGTCCTTGCTCTGCAATCAAACCAGTTAGCTGGAGCTATCCCTGCTAGTCTAGGTGATTTGGGAATGTTGATGAGGTTAGATCTGAGTTCTAATCATCTCTTTGGTTCCATTCCCACTAGACTAGCTGATGTTCCTTCATTGCAAGTTCTGGATGTTCACAACAATACTCTCTCTGGGAATGTACCCCCTGCTCTGAAGAGATTAGATGAAGGATTTGTGTATGAATACAATCTGGGGTTATGTGGAGTTGGGTTTTCATCCTTGAAAGCTTGCAATGCTTCAGATCATGTGAATCCCAACAGGCCTGAACCTTATGGAGCAGGAGTTACTGGTCTTTCAAGGGATATCCCAGAAACTGCAAATATAAAGTTGCCTTGCAATACAACTCAGTGCCAAAATTCATCAAAATCCAAAAGAGCAACATCTATTACTGTTGGTACAATTGTGGTTACAATTGCATTATCAGCAATTGCTATTCTGACCTTCACCATGTATCGTCGGCGAAAGCAAAAGCTTGGAAGTGCATTTGACATCACTGAAAGCCGTCTAAGTACTGATCAAACCAAGGGTATATACAGGAAAAATGGATCTCCTTTGGTCAGCCTTGAGTACGCCAATGGATGGGATCCATTGGCTGATAGCAGGAATTTTAATGGGGATAGGCAAGATATGTTCCAGAGTTTCAGGTTCAACTTGGAAGAAGTGGAGTCAGCTACTCAGTATTTCTCAGAGTTGAATTTGTTGGGTAAGAGTAACTTTAGTGCAACATATAAAGGAGTTTTAAGAGATGGATCTGTTGTTGCTGTTAAGAGCATCAGTAAAACTAGTTGCAAATCAGATGAAGCTGAATTTTTGAAGGGGTTGAACATTTTGACCTCACTGAGGAATGAGAATCTAGTGAGGTTGAGAGGATTTTGTTGTTCAAGGGGAAGAGGTGAATGCTTCCTGGTTTATGATTTTGTTTCTAATGGAAATCTGACGCGCTACCTTGATGTGAAGGAAGGTGATGGAGAAGTCCTTGAATGGTCTACTAGAGTTTCTATTGTAAAAGGAATTGCTAAAGGTATCGCATATTTGCATGCATACAAAGCAAACAAGCCTGCCCTTGTTCACCAAAACATCTCAGCTGAGAAAGTGCTCATTGATCAGCGGCACAACCCACTGCTTTCAGATTCAGGCCTGTACAAGCTTCTCACCAATGACATTGTCTTCTCTGCCCTCAAAGGCAGTGCAGCAAAAGGTTACCTAGCTCCAGAATACACCACCACCGGCCGGTTCACAGAGAAAAGTGATGTCTATGCTTTTGGGGTGCTTCTCTTCCAAATCCTCACAGGGAAGCAGAAGATCACCAGCTCAATGCGCCAAGCTGCAGAATCCTTCAGATTCCAAGAATTCATAGACTCGAATCTCCATGAAAGGTTCTTCGAATACGAGGCAGCTAAACTAGCAAGAATGGCTCTACTTTGCTCCCATGACTCTCCCTTTGAGAGGCCAACCATGGAAGCCATTGTTCAGGAACTAAACAATTGTAGTAGCTGTCTGTGA 2130 0.423 MGRSVLVFLIFSLLGFVLNPTCVCGNDELRALLDLKATLDPDGQFLSSWTMNGNPCSGSFEGVACNEKGQVANVSLQGKGLSGKLSPAIAGLKHLTGLYLHYNSLYGEIPREIANLTELSDLYLNVNHLSGEIPHEIGKMENLQEKSPLEDALCNYNYDFEQPDVSDLIARVLQLCYNQLTGSIPTQLGDLKKLSVLALQSNQLAGAIPASLGDLGMLMRLDLSSNHLFGSIPTRLADVPSLQVLDVHNNTLSGNVPPALKRLDEGFVYEYNLGLCGVGFSSLKACNASDHVNPNRPEPYGAGVTGLSRDIPETANIKLPCNTTQCQNSSKSKRATSITVGTIVVTIALSAIAILTFTMYRRRKQKLGSAFDITESRLSTDQTKGIYRKNGSPLVSLEYANGWDPLADSRNFNGDRQDMFQSFRFNLEEVESATQYFSELNLLGKSNFSATYKGVLRDGSVVAVKSISKTSCKSDEAEFLKGLNILTSLRNENLVRLRGFCCSRGRGECFLVYDFVSNGNLTRYLDVKEGDGEVLEWSTRVSIVKGIAKGIAYLHAYKANKPALVHQNISAEKVLIDQRHNPLLSDSGLYKLLTNDIVFSALKGSAAKGYLAPEYTTTGRFTEKSDVYAFGVLLFQILTGKQKITSSMRQAAESFRFQEFIDSNLHERFFEYEAAKLARMALLCSHDSPFERPTMEAIVQELNNCSSCL. 710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g04290 709 Gene3D Ribonuclease Inhibitor 25 147 IPR032675 -
Seca10g04290 709 Gene3D Ribonuclease Inhibitor 172 279 IPR032675 -
Seca10g04290 709 SUPERFAMILY L domain-like 59 262 - -
Seca10g04290 709 FunFam Leucine-rich repeat receptor protein kinase EMS1 165 259 - -
Seca10g04290 709 ProSiteProfiles Protein kinase domain profile. 437 709 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g04290 709 Gene3D Transferase(Phosphotransferase) domain 1 516 708 - -
Seca10g04290 709 Pfam Leucine rich repeat N-terminal domain 26 66 IPR013210 -
Seca10g04290 709 FunFam Protein NSP-INTERACTING KINASE 2 516 706 - -
Seca10g04290 709 FunFam Nuclear pore complex protein NUP107 25 152 - -
Seca10g04290 709 FunFam Protein NSP-INTERACTING KINASE 2 408 515 - -
Seca10g04290 709 Gene3D Phosphorylase Kinase; domain 1 408 515 - -
Seca10g04290 709 Pfam Protein tyrosine and serine/threonine kinase 441 702 IPR001245 GO:0004672|GO:0006468
Seca10g04290 709 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 73 704 - -
Seca10g04290 709 SUPERFAMILY Protein kinase-like (PK-like) 415 703 IPR011009 -
Seca10g04290 709 Pfam Leucine rich repeat 171 228 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g04290 Seca-Chr10 97248179 97252079 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g04290 16 550 Miscellaneous Gene Families AT4G22730 53.945 0.0 558
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IV Seca10g04290 PK_Tyr_Ser-Thr 8.7e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g04290 - - gmx:100789253 1196.03