Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g04280 ATGGAGGAAAGAGATATTTTTGGTTCTGGGCATGCTGTTAAGGTTAACGAGGCCCCAGAGAGCTTCCACGTGGGACTAAATTCCATGCAGTTTCCCGGGCCCACGACTCAGTCTCCGGCGCCGGCGCCGGCGCCGGTTCCTGCTCCGGCGAATGAAGCGGCGGTGACGCCTGGTAGTACGGATGGAAAGAAGAAGAGAGGTAGGCCTAGGAAGTATGGACCGGACGGCAAGGTGGCGCTGTCGCCGATGCCGATATCGGCGTCAATTCCGTTGACCGGAGATTTCTCAGGCTGGAAAAAGGGTAGAGGGAAACCGTTTGAGTCAATCAAGAAGTCTTATAAGTTTTATGATTTTGAAGGTTCAGCAGGACCAGCTACCTATTTTATAGGTGATGGAATTGCATACTCAGTTGGTTCCAATTTTACAGCTCACATACTTACCGTAAATGCTGGCGAGGATGTTACTATGAAGATTATGTCCTTCTCTCAACAAGGATGCCATGCTATATGCATTCTCTCTGCAAATGGCACAATTTCAAATGTTACACTTCGACAACCGACATCTTCTGGTGGTACTTTAACATATGAGGGAAGGTTTGAGATTCTTTCCTTGTCTGGTTCATTTATGCCAACTGAGAATGGATTAACAAGGAGCAGATCCGGTGGAATGAGTGTCTCTTTGGCAGGTCCAGATGGTCGAGTTATGGGGGGTGGACTGGCTGGTCTGCTGGTAGCTGCAGGTCCTGTGCAGGTTGTGGTAGGAAGTTTTCTTCCAGGTCACCAGCTAGAGCATAAAGCCAAGAAGCAGAGGGTGGAACATATATCAATGGTTGCCCCTACACATGCTAATCCTATTTCTACTGAAAAAATAAACATCAGTCTTGGTGGAATAAAGCCTATCATGACACCTGCTGGCTTTCAAGTTGGCAACATTGCTTCTTATAACAATGGTCATGGCTCTAGGAACTCATCTATTGATGATGAGGCTCCTTTTCATGAAAAGGAATCTAACCCCACCCAATCAGATGCTGGAATTGCATGCTAA 1044 0.4722 MEERDIFGSGHAVKVNEAPESFHVGLNSMQFPGPTTQSPAPAPAPVPAPANEAAVTPGSTDGKKKRGRPRKYGPDGKVALSPMPISASIPLTGDFSGWKKGRGKPFESIKKSYKFYDFEGSAGPATYFIGDGIAYSVGSNFTAHILTVNAGEDVTMKIMSFSQQGCHAICILSANGTISNVTLRQPTSSGGTLTYEGRFEILSLSGSFMPTENGLTRSRSGGMSVSLAGPDGRVMGGGLAGLLVAAGPVQVVVGSFLPGHQLEHKAKKQRVEHISMVAPTHANPISTEKINISLGGIKPIMTPAGFQVGNIASYNNGHGSRNSSIDDEAPFHEKESNPTQSDAGIAC. 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g04280 347 FunFam AT-hook motif nuclear-localized protein 1-like 143 274 - -
Seca10g04280 347 Pfam Plants and Prokaryotes Conserved (PCC) domain 143 256 IPR005175 -
Seca10g04280 347 MobiDBLite consensus disorder prediction 317 347 - -
Seca10g04280 347 CDD DUF296 144 256 IPR005175 -
Seca10g04280 347 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 32 312 IPR039605 GO:0003680
Seca10g04280 347 MobiDBLite consensus disorder prediction 24 77 - -
Seca10g04280 347 MobiDBLite consensus disorder prediction 36 50 - -
Seca10g04280 347 Gene3D - 142 277 - -
Seca10g04280 347 SUPERFAMILY AF0104/ALDC/Ptd012-like 139 258 - -
Seca10g04280 347 ProSiteProfiles PPC domain profile profile. 138 280 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g04280 Seca-Chr10 96844045 96851477 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g04280 53 269 AT-hook Motif Nuclear Localized (AHL) Family AT5G62260 61.404 6.88e-86 263
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g04280 - - gmx:102667678 490.345
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g04280 10 96844045 96851477 Seca10g04280 10 96844045 96851477 ECH