Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g04272 ATGGTTCCACCACTTTGTGCTAATGGTTGTGGCTTTTACGGTTCCGTTGAAAACAAGAACCTTTGTTCAAAGTGCTACATAGATTATTTAAAACAGAACACCTCTGTTCTTGAGGCATCTCCTTCTCATAAAGAGGATCCTGTTGTAACTGATGCTTGTGCTGCTGTTTCTGCTATTACACTCAACGACTCTACCACCGTAAAGAACACCACACAGAGATGCAAGTGTTGCAACAAAAAAGTTGGACTCACAGGATTCAAGTGTCGCTGTGGAGATGTGTTTTGTGGAAGGCATAGGTACCCAGAAATGCACCCATGTAATGTGGATTTGAAAAAGATTGGTAGTGAGATTTTGGCTAAACAAAATCCCAAATGCATTGGTGATAAGTTAGAAGACAGAATCTAG 405 0.4074 MVPPLCANGCGFYGSVENKNLCSKCYIDYLKQNTSVLEASPSHKEDPVVTDACAAVSAITLNDSTTVKNTTQRCKCCNKKVGLTGFKCRCGDVFCGRHRYPEMHPCNVDLKKIGSEILAKQNPKCIGDKLEDRI. 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g04272 134 Gene3D - 1 48 - -
Seca10g04272 134 SMART A20_3 3 27 IPR002653 GO:0003677|GO:0008270
Seca10g04272 134 PANTHER AN1-TYPE ZINC FINGER PROTEIN 3 131 - -
Seca10g04272 134 Pfam AN1-like Zinc finger 74 107 IPR000058 GO:0008270
Seca10g04272 134 Pfam A20-like zinc finger 5 26 IPR002653 GO:0003677|GO:0008270
Seca10g04272 134 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 5 36 - -
Seca10g04272 134 ProSiteProfiles Zinc finger AN1-type profile. 68 114 IPR000058 GO:0008270
Seca10g04272 134 SUPERFAMILY AN1-like Zinc finger 63 128 IPR035896 -
Seca10g04272 134 Gene3D - 52 127 IPR035896 -
Seca10g04272 134 ProSiteProfiles Zinc finger A20-type profile. 1 34 IPR002653 GO:0003677|GO:0008270
Seca10g04272 134 SMART AN1_Zf_4 74 111 IPR000058 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g04272 Seca-Chr10 96553362 96553766 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g04272 5 131 C2H2 Transcription Factor Family AT3G52800 38.065 7.71e-24 89.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g04272 - - gmx:102666624 167.548