Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g04253 ATGATCAAGCAGGTTCTTCTTCTGTTCTGCTTGGCCTCTGGACTGACCCTTTCAGTTTCAGAGTCCAACTCTGCTTCTCTGCTGCCTCACGCTGTAGAATCCTTCGAGGTTGGCTACATCCAGATGGAGAGTGAACATAACTGTTCTTATTTGGTGATGATAACAACAAGTTGTTCTTCACCCAAGTTAACTCGGGATGAGATCAGTTTGGCATTTGGGGATGCTTCTGGAAACCAGCAGGTATATGCACCCAGACTGGATGATCCAATTTCAAGGACATTTGAGCAATGCTCTTCAGATTCATTTCAGATAGATGGTCCATGTGCTTCTCCAATTTGTTATGCGTACCTATACAGATCTGGTATTGATGATGGTTGGAAGCCTGAAACCGTGAAAATCTATGGCTTTGACGACGCAAATCCTGTTACTTTTAATTTCAACACCCCCATCCCAAATGATACGTGGTTCGGATATAATTTCTGCCAGACTCCTCCTCCATCTTCTTCATACAAACTATCCACTCAGAAATGGCTCATATGTATGGTTGTAGGATTTGTTCTTAGTTTTTGGCTGTAA 576 0.4271 MIKQVLLLFCLASGLTLSVSESNSASLLPHAVESFEVGYIQMESEHNCSYLVMITTSCSSPKLTRDEISLAFGDASGNQQVYAPRLDDPISRTFEQCSSDSFQIDGPCASPICYAYLYRSGIDDGWKPETVKIYGFDDANPVTFNFNTPIPNDTWFGYNFCQTPPPSSSYKLSTQKWLICMVVGFVLSFWL. 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g04253 191 CDD PLAT 48 163 - -
Seca10g04253 191 PANTHER PLAT DOMAIN-CONTAINING PROTEIN 5 168 - -
Seca10g04253 191 Gene3D PLAT/LH2 domain 44 157 - -
Seca10g04253 191 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 46 158 IPR036392 GO:0005515
Seca10g04253 191 Pfam Embryo-specific protein 3, (ATS3) 41 161 IPR010417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g04253 Seca-Chr10 96128652 96130586 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g04253 - - gmx:100499779 288.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g07526 8 172500528 172501691 Seca10g04253 10 96128652 96130586 PCT