Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g04250 ATGCCTTCCCTTCCTCTCTCCAACGGCGCAGTTCTCAGCGAGAGCCCCAAAGACAAGACAAAGAAGAAGAAGGAGAAGAAGAACCAGTCCGTAAACGACGCCGTTTCAGAGCTGGAAGTTCTGGGCTCGAAGAGCAAGAGCAAGAAGAACTCGAAGGAGAGCAAGAAGCGGAAGAAGGGTTCGGATGAGGAAGAGGAGCAGGAGAAGAGTGATACTAGCTCTGAGCTCGTGGAGCCCACAGAGGAAGGCTCGGGAATGAAGGAGAGTAAGAAGAAGAAGAAGAAGGCAAGGGTTGAGGAAGAACAAGAGATGGAAGTAGAAAAAGAAGAAGAAGTTGAGAAGGAGAATCCGAATGCGATTTCCAAGTTTAGAATATCGGAGGCGTTGAGGGCGAAGCTGAAGGAGAAGGGGATAGAATCGCTGTTTCCCATTCAGGCCATGACCTTCGATACGATCCTTGATGGCTCCGATTTGGTTGGACGCGCTCGCACCGGTCAGGGTAAAACTCTGGCCTTTGTGTTGCCAATATTAGAGTCTTTGACAAATGGTCCAGGTAAAGCGGCGAGAAAGACTGGCTATGGCAGGTCTCCGAGTGTCCTTGTGCTTTTACCTACTAGGGAATTGGCCAGTCAGGTGTTTGCTGATTTTGAAGTTTATGGTTTGGCAATGGGATTGACTTCTTGCTGTTTATATGGTGGAGCTCCATATCATGCTCAAGAGATTAAGCTTAAGAGAGGTGTTGATATTGTTGTTGGAACACCGGGTCGCATAAAGGATCATATAGAGAGGCAAAATATTGACTTGAGCCAGCTAAGGTTCCGTGTCCTTGACGAGGCAGATGAGATGCTGAGGATGGGGTTTGTTGAAGATGTTGAACTCATCCTAGGTAAGGTAGAAGATGTTAATAAAGTTCAGACACTTCTTTTTAGTGCTACTTTGCCAGACTGGGTTAAGCATATTCAAGCAAAATTTCTGAAACGAGATAAGAAAACTGCTGATCTTGTTGGCAATGAGAAAATGAAGGCTAGCACCAATGTTAGGCATATTGTTCTTCCATGCAACAGTTCTGCCAGGTCGCAGCTTATCCCTGACATTATTCGCTGTTATAGCAGTGGAGGTCGGACAATTATATTTACTGAGAAGAAGGAGTCTGCTTCTGAACTTGCGGGATTGCTGCCTGGTGCAAGAGCTCTCCATGGTGACATACAGCAGTCACAACGAGAGGTTACATTGTCAGGTTTTAGGTCTGGGAAATTCATGACATTGGTAGCCACAAATGTGGCAGCTAGGGGTCTGGATATTAATGATGTTCAGTTGATTATTCAGTGTGAGCCTCCACGGGATGTGGAAGCATATATCCATCGCTCTGGGCGCACAGGAAGAGCCGGTAATACTGGAGTTGCTGTAATGCTTTATGATCCAAGAAGGTCAAATGTATCTAAAATAGAAAAAGAATCAGGCGTGAAATTTGAACACGTATCTGCTCCTCAGTCTGATGATATTGCCAAAGCTGTTGGTGGGGAAGCTGCTGAAATGATTACCCAAGTATCTGATAGTGTGATTCCTGCATTCAAATCTGCTGCTGAGGAGCTCTTGAACAACTCTGGTTTATCAGCTGTTGAATTAGTTGCAAAAGCTCTTGCCAAGGCTGTTGGTTTTACTGAGATAAAGAAAAGATCACTTCTGACTTCCATGGAGAATTATGTTACATTACTTCTTGAGATTGGAAGACCTATCTTCACCCCATCCTTTGCATTTGGAATCCTAAGGAGATTTATGCCTGAGGAGAAGGTCGAGGCAGTGCAGGGTCTTACTCTCACTGCAGATGGAAATGGTGCTGTTTTTGATGTACCAGCCAAAGATTTAGATTCATATCTTACTGGTAGTCAGCAGAATGCTGCTAATGTAAGCCTAGAGGTGTTAAAAGCTTTGCCACGTTTGCAAGAAAGAGACCAATCAAGAGGGGGAAGATTTGGTGGTGGCCGTGGGTTTAATGATAGACATGGTGGGAATAGGTTTTCAGGTGGAAGAGGTGGCAGGAATAATAGGTTTTCAAATGGTTTTAATGGTGGGAGAGGTAATGGTGGCAGAGGGGGGAAGAGATGGTAA 2109 0.4514 MPSLPLSNGAVLSESPKDKTKKKKEKKNQSVNDAVSELEVLGSKSKSKKNSKESKKRKKGSDEEEEQEKSDTSSELVEPTEEGSGMKESKKKKKKARVEEEQEMEVEKEEEVEKENPNAISKFRISEALRAKLKEKGIESLFPIQAMTFDTILDGSDLVGRARTGQGKTLAFVLPILESLTNGPGKAARKTGYGRSPSVLVLLPTRELASQVFADFEVYGLAMGLTSCCLYGGAPYHAQEIKLKRGVDIVVGTPGRIKDHIERQNIDLSQLRFRVLDEADEMLRMGFVEDVELILGKVEDVNKVQTLLFSATLPDWVKHIQAKFLKRDKKTADLVGNEKMKASTNVRHIVLPCNSSARSQLIPDIIRCYSSGGRTIIFTEKKESASELAGLLPGARALHGDIQQSQREVTLSGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRRSNVSKIEKESGVKFEHVSAPQSDDIAKAVGGEAAEMITQVSDSVIPAFKSAAEELLNNSGLSAVELVAKALAKAVGFTEIKKRSLLTSMENYVTLLLEIGRPIFTPSFAFGILRRFMPEEKVEAVQGLTLTADGNGAVFDVPAKDLDSYLTGSQQNAANVSLEVLKALPRLQERDQSRGGRFGGGRGFNDRHGGNRFSGGRGGRNNRFSNGFNGGRGNGGRGGKRW. 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g04250 702 FunFam DEAD-box ATP-dependent RNA helicase 7 569 642 - -
Seca10g04250 702 CDD SF2_C_DEAD 346 472 - -
Seca10g04250 702 Gene3D - 566 642 - -
Seca10g04250 702 MobiDBLite consensus disorder prediction 1 116 - -
Seca10g04250 702 SUPERFAMILY RNA-binding domain, RBD 556 632 IPR035979 GO:0003676
Seca10g04250 702 Coils Coil 21 41 - -
Seca10g04250 702 MobiDBLite consensus disorder prediction 15 32 - -
Seca10g04250 702 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 61 535 - -
Seca10g04250 702 SMART helicmild6 386 463 IPR001650 -
Seca10g04250 702 Pfam DEAD/DEAH box helicase 142 319 IPR011545 GO:0003676|GO:0005524
Seca10g04250 702 CDD DEADc 129 327 - -
Seca10g04250 702 MobiDBLite consensus disorder prediction 651 702 - -
Seca10g04250 702 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 360 502 IPR001650 -
Seca10g04250 702 Gene3D - 331 492 IPR027417 -
Seca10g04250 702 Pfam Helicase conserved C-terminal domain 365 463 IPR001650 -
Seca10g04250 702 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 275 283 IPR000629 -
Seca10g04250 702 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 149 331 IPR014001 -
Seca10g04250 702 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 196 475 IPR027417 -
Seca10g04250 702 MobiDBLite consensus disorder prediction 56 102 - -
Seca10g04250 702 CDD GUCT_RH7_like 559 645 - -
Seca10g04250 702 SMART ultradead3 137 349 IPR014001 -
Seca10g04250 702 Pfam GUCT (NUC152) domain 552 648 IPR012562 GO:0003723|GO:0004386|GO:0005524
Seca10g04250 702 Coils Coil 90 115 - -
Seca10g04250 702 Gene3D - 73 330 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g04250 Seca-Chr10 96024357 96029731 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g04250 125 469 Eukaryotic Initiation Factors Gene Family AT3G19760 29.491 1.86e-39 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g04250 K16911 - jre:108998595 934.095