Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g04249 ATGGCTTCCTATAACACAATTCTCTTCCTCTTAATCCTTGTTAGCTTCCTCTGTTTTGCAATAAGTGACTCACAAGACGACCCTTTTTATCTCTACCAAGATTGCTCCAGCGACAAAACCAATGCCAATACCTCCTTCCAATTAAATCTCAACACCCTCCTTTCTTCCTTACCATCTAACGCCACGGGCAACACCCAATTCTACAACACCACATTCATTGGAAATAACCCCTCTGACACAATCTATGCCATGTTCATGTGCAGAGGTGATGTTCCCTCTCACCTCTGTCAACAATGCATCATAAATGCAACCCAGCGACTATCCTCAGAGTGCCCCTTATCCAAACAAGCTACAATTTGGTACGAAGAGTGTATGGTTTGGTATTCCACCACCTCTATCTTCTCCACCGTAGCCACAACCCCTAACTTCCCCATGCAGAACAGCGGCAACGTCTCCAACCCAGAAAACTTCAAGCTTTTATTGTTTTCAACAATGAACCAAACCGCAGAAGAAGCAGCAAATTCTCCTTACAAGAAGTTTGCCACAAAGGAAGTAAATGTAACCGTGTCAGGATTTCAAACCCTTTACTTTCTAGCTCAGTGCACACCGAACCTTTCACCCCACGATTGCAGAACGTGTCTCAGTGAAATGATAGGTGACATTCCATCTTGCTGTGAAGGAAGGCTTGGAGGAAGAGTTCTATGTCCTAGCTGTAACATTAGATATGAACTCTACCCTTTTTATCACACCATTGTTCCGTCACCAAAGCCTGCACCAGCTATTGTTCCTGCAACAAACACCTTACATGCAGATTCAGAATTTTCTGAGGACTCTGTTTACCTTTCCCACAATTGCTCAACTAAATACAACTTCACTTCCAATAGCACTTTTGAAACAAACCTCAAGACTCTTCTCTCTTACTTGTCTTCCAATGCAACCAGCGACAAGAAATTTCATAAGGTTAATGTCACAAACAACGTGTATGGTCTCTTCATGTGCCGAGGTGACCTTCCCTCTCCGCTATGTGGAAAATGCGTCCAAAACGCAACGAATCGAGTATCCTCAGAGTGTCGTTTATTCCGGGAGGGTATAATTTGGTACAGCCACTGTATGCTTCGCTATTCCTATAGGAATTTCTTCTCAAAAGTGGACACAAGTGTTGTATATTACAATTTGAATATCACTAGTAAATCCATCCCCAAAGAGGAACAAGATTACTTCATTGTTACATTAGCGAAAACGCTAGATAAAGCGGCAATTCAGGCAGGGGATAGTGATAGGAGATACGGAACAAAATCAACAAAATTGAATGATGTCCAAACTCTTTATGCACTTGGTCAATGTACTCAGGATTTGTCTATTAATGATTGCAAGGGATGTCTTGGAGAAGTGATTGGAACAGCAATTCCATGGTCTCGTTTGGGAAGCGTAGGGGGAAGAGTTATGTATCCTAGCTGCAATCTCAGGTTTGAATTGTTTCAATTTTACAGGGATGTTGCTGACCAAGCTCGATCTCCCAGCCCAGGTAGTGATTCTCCATCAGCACATACAGAAAAGAAAGATGATCAATCGCGAACAATTGCGATTGTTGTGGCCATAATTGTTTTCGTGATATTCTTCTCTTTCGGCTACTACTTGCTAAGGAGAAAAACAAAAAAAAGTTATAAGAATACTCTCAAAGAAAACTTTGGTCAGGAATTTGCCGCTTTAGAGCCATTGCAATTTGATTTGACTATAATTGAAGCAGCAACCAACAACTTTGCATGTGAAAATATGATTGGTAAAGGCGGATTTGGAGAAGTTTACAAGGGCATTCTTAATGATGGACAACAAATAGCTATAAAAAGATTGTCAAAAAGTTCTACGCAAGGTGTTAATGAGTTCAAGAACGAAGTTTTATTGATAGCAAAACTCCACCACAGAAATCTAGTGGCATTCATCGGTTTCTGCCTTGAAGAACAAGAGAAAATACTTATTTATGAATATGTGCCAAACAAGAGCCTTGATTACTTTTTATTTGATTCTCATCGACAAAAGTTGTTAAGCTGGTTTGAACGTTACAATATTATAGGAGGGATTGCTCGAGGAATTCATTATTTACATGAACATTCTCGACTCAAAATTATACATCGTGATCTCAAACCTAGTAATGTTCTACTAGATGAAAATATGGTTCCAAAAATTTCAGATTTTGGTCTAGCTAGAAATGTTGAAATAAATCAAGACCAAGGAAGTACAAATAGAATTGTTGGAACATATGGTTATATGTCTCCAGAATATGCAATGCTTGGACAATTTTCTGAGAAATCAGATGTTTTTAGTTTTGGAGTCATGATTTTAGAGATTATTACAGGAAAAAAGAATCTAAGCTCTTACGAGTCACATCGCGTGGTCGATGGTCTCCTAAGTTATGTTTGGAAACAATGGAAGGAGCAAACTCCATTGAGAACATTGGACCGAGATATTGAAAAGAATTATTCTGAAATTGAAGTTCTTAAATGCATTCAAATTGGTTTATTATGTGTTCAACATAACCCTGATGATAGACCTACAATGGCAACAATTGTTTCTTATCTTAGTAGTTATTTTATTGAATTGCCGACACCACAAGAACCTGCATTTTTCTTGCACGGTAGAATGGATGCACAAGTATTTGCACAGGAATCAAGTTCTAGTCAATCTATCAACACTTTCACACCATTCTCAATCAATGAAATGCCTATAAGTGAGCTTATTCCTCGATAA 2745 0.3898 MASYNTILFLLILVSFLCFAISDSQDDPFYLYQDCSSDKTNANTSFQLNLNTLLSSLPSNATGNTQFYNTTFIGNNPSDTIYAMFMCRGDVPSHLCQQCIINATQRLSSECPLSKQATIWYEECMVWYSTTSIFSTVATTPNFPMQNSGNVSNPENFKLLLFSTMNQTAEEAANSPYKKFATKEVNVTVSGFQTLYFLAQCTPNLSPHDCRTCLSEMIGDIPSCCEGRLGGRVLCPSCNIRYELYPFYHTIVPSPKPAPAIVPATNTLHADSEFSEDSVYLSHNCSTKYNFTSNSTFETNLKTLLSYLSSNATSDKKFHKVNVTNNVYGLFMCRGDLPSPLCGKCVQNATNRVSSECRLFREGIIWYSHCMLRYSYRNFFSKVDTSVVYYNLNITSKSIPKEEQDYFIVTLAKTLDKAAIQAGDSDRRYGTKSTKLNDVQTLYALGQCTQDLSINDCKGCLGEVIGTAIPWSRLGSVGGRVMYPSCNLRFELFQFYRDVADQARSPSPGSDSPSAHTEKKDDQSRTIAIVVAIIVFVIFFSFGYYLLRRKTKKSYKNTLKENFGQEFAALEPLQFDLTIIEAATNNFACENMIGKGGFGEVYKGILNDGQQIAIKRLSKSSTQGVNEFKNEVLLIAKLHHRNLVAFIGFCLEEQEKILIYEYVPNKSLDYFLFDSHRQKLLSWFERYNIIGGIARGIHYLHEHSRLKIIHRDLKPSNVLLDENMVPKISDFGLARNVEINQDQGSTNRIVGTYGYMSPEYAMLGQFSEKSDVFSFGVMILEIITGKKNLSSYESHRVVDGLLSYVWKQWKEQTPLRTLDRDIEKNYSEIEVLKCIQIGLLCVQHNPDDRPTMATIVSYLSSYFIELPTPQEPAFFLHGRMDAQVFAQESSSSQSINTFTPFSINEMPISELIPR. 915
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g04249 914 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 278 378 - -
Seca10g04249 914 SUPERFAMILY Protein kinase-like (PK-like) 572 896 IPR011009 -
Seca10g04249 914 ProSitePatterns Serine/Threonine protein kinases active-site signature. 708 720 IPR008271 GO:0004672|GO:0006468
Seca10g04249 914 FunFam cysteine-rich receptor-like protein kinase 10 663 866 - -
Seca10g04249 914 FunFam Cysteine-rich receptor-like protein kinase 25 388 495 - -
Seca10g04249 914 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 28 132 - -
Seca10g04249 914 SMART serkin_6 587 863 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g04249 914 FunFam Cysteine-rich receptor-like protein kinase 25 141 247 - -
Seca10g04249 914 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 548 662 - -
Seca10g04249 914 Gene3D Phosphorylase Kinase; domain 1 547 662 - -
Seca10g04249 914 ProSiteProfiles Gnk2-homologous domain profile. 279 379 IPR002902 -
Seca10g04249 914 ProSiteProfiles Gnk2-homologous domain profile. 389 495 IPR002902 -
Seca10g04249 914 CDD STKc_IRAK 593 859 - -
Seca10g04249 914 ProSiteProfiles Gnk2-homologous domain profile. 28 133 IPR002902 -
Seca10g04249 914 Pfam Protein kinase domain 590 857 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g04249 914 Gene3D Transferase(Phosphotransferase) domain 1 663 866 - -
Seca10g04249 914 Pfam Salt stress response/antifungal 285 375 IPR002902 -
Seca10g04249 914 Pfam Salt stress response/antifungal 149 245 IPR002902 -
Seca10g04249 914 Pfam Salt stress response/antifungal 411 491 IPR002902 -
Seca10g04249 914 Pfam Salt stress response/antifungal 35 130 IPR002902 -
Seca10g04249 914 ProSitePatterns Protein kinases ATP-binding region signature. 593 615 IPR017441 GO:0005524
Seca10g04249 914 ProSiteProfiles Gnk2-homologous domain profile. 139 247 IPR002902 -
Seca10g04249 914 Gene3D - 387 495 IPR038408 -
Seca10g04249 914 Gene3D - 28 132 IPR038408 -
Seca10g04249 914 Gene3D - 140 247 IPR038408 -
Seca10g04249 914 Gene3D - 277 379 IPR038408 -
Seca10g04249 914 ProSiteProfiles Protein kinase domain profile. 587 863 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g04249 914 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 263 903 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g04249 Seca-Chr10 95986901 95993061 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g04249 275 914 Receptor kinase-like Gene Family AT4G05200 42.727 2.20e-176 525
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca10g04249 Pkinase 1.8e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g04249 - - gmx:100806048 1243.41