Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g04247 ATGACGGACGGTCATCTCTTCAACAACATCACCCTCGGAGGTCGTGGAGGCACTAATCCTGGGCAGATAAAAATATCTTCTGGAGGAATTTTATGGAAGAGACAGGGTGGTGGTAAATTAATTGAAGTTGATAAAGCTGACATAATGGGGGTGACATGGATGAAGGTTCCTAGGACTAATCAACTTGGTGTTCAGATAAAAGATGGGTTGTACTACAAATTCACTGGATTCCGTGATCAGGATGTTGTAAGTTTGACCAATTTTTTCAAAAACACCTTTGGAATAACTGTAGAGGAGAAGCAGCTGTCTGTCAGTGGGCGCAATTGGGGAGAAGTTGATCTGAATGGAAATATGCTGGCTTTCATGGTTGGTTCAAAGCAAGCTTTTGAGGTGTCTTTAGCGGATGTCTCTCAAACACAGCTTCAAGGGAAAAATGATGTGATCTTGGAGTTTCATGTTGATGACACAACTGGAGCTAATGAGAAAGATTCATTGATGGAGATGAGTTTCCATATACCAAATTCCAACACCCAGTTTGTTGGTGATGAAAATCGTCCTCCTGCTCAAGTTTTCCGTGATAAAATAATGTCTATGGCCGATGTTGGTGCTGGAGGTGAAGATGCTGTTGTTACATTTGAGGGTATTGCGATCCTTACACCAAGGGGACGATACAGTGTTGAGTTACACCTGTCATTCTTGCGTCTTCAAGGACAGGCTAATGATTTCAAAATCCAGTATAGCAGTGTGGTTCGCCTATTTTTGCTTCCTAAGTCTAATCAACCACATACCTTCGTCGTTATTAGTCTTGACCCCCCTATTCGGAAAGGACAAACTTTGTACCCTCATATTGTGATGCAGTTTGAAACTGATTATGTCGTTCAAAGTGAATTGGCAATAAATGAAGATCTTTATAACACAAAGTACAAAGACAAGTTGGAGCTGTCTTATAAGGGGCTCATCCATGAAGTGTTCACCACAATATTACGAGGCTTGTCAGGGGCAAAAGTTACTAAGCCCGGAAAATTTAGGAGTTGTCAAGATGGTTATGCAGTGAAATCATCTTTGAAAGCTGAAGATGGAATTCTGTATCCCCTTGAGAAGAGCTTCTTCTTTCTACCTAAACCTCCCACTCTTATTCTTCATGAAGAGATTGACTATATGGAATTTGAGCGACATGCTGCTGGTGGTTCAAATATGCATTATTTTGACCTTCTTGTCCGACTAAAATCTGAGCAAGAGCATCTCTTTCGTAATATTCAGAGAAATGAATACCACAATTTGTATGGTTTTATCAGTTCAAAGGGCTTGAAAATTATGAACTTAGGGGATGCCCAACCAACTGTTGGTATGGCTAAGGTTCTTGAGAGTGATGATGATGATGCTGTTGATCCACATCTTGAGCGCATCAGAAATGAAGCCGGTGAAGATGAAAGTGATGAGGAGGATGAAGATTTTGTTGCTGACAAGGATGATGGAGGTTCTCCTACTGATGATTCTGGGGCAGATGATTCTGATGCTAGCCAAAGTGGTGATGAGAAAGAGAAGCCTGCCAAAAAAGAATCAAAGAAGGATATGTCTTCTAAGGCATCTACTTCTAAGAAGAAATCAAAAGATGTTGATGAAGATGGAAAGAAGAAAAAACAGAAGAAGAAAAAGGACCCAAATGCACCCAAGAGGGCAATGTCTGGTTTCATGTTCTTTTCTCAAATGGAAAGAGAGAATTTAAAGAAAACTAATCCTGGAATTTCATTTACGGATGTGGGAAGGGTACTTGGAGAGAAATGGAAAAAGATGTCAGCGGAGGAGAAGGAACCATACGAGGCAAAAGCTCGTGCTGATAAAAAACGTTACAAGGACGAGATTAGTGGCTACAAGAATCCACAAGCCATGAATATTGACTCAGGAAATGAATCTGATAGTGCCTAA 1926 0.4065 MTDGHLFNNITLGGRGGTNPGQIKISSGGILWKRQGGGKLIEVDKADIMGVTWMKVPRTNQLGVQIKDGLYYKFTGFRDQDVVSLTNFFKNTFGITVEEKQLSVSGRNWGEVDLNGNMLAFMVGSKQAFEVSLADVSQTQLQGKNDVILEFHVDDTTGANEKDSLMEMSFHIPNSNTQFVGDENRPPAQVFRDKIMSMADVGAGGEDAVVTFEGIAILTPRGRYSVELHLSFLRLQGQANDFKIQYSSVVRLFLLPKSNQPHTFVVISLDPPIRKGQTLYPHIVMQFETDYVVQSELAINEDLYNTKYKDKLELSYKGLIHEVFTTILRGLSGAKVTKPGKFRSCQDGYAVKSSLKAEDGILYPLEKSFFFLPKPPTLILHEEIDYMEFERHAAGGSNMHYFDLLVRLKSEQEHLFRNIQRNEYHNLYGFISSKGLKIMNLGDAQPTVGMAKVLESDDDDAVDPHLERIRNEAGEDESDEEDEDFVADKDDGGSPTDDSGADDSDASQSGDEKEKPAKKESKKDMSSKASTSKKKSKDVDEDGKKKKQKKKKDPNAPKRAMSGFMFFSQMERENLKKTNPGISFTDVGRVLGEKWKKMSAEEKEPYEAKARADKKRYKDEISGYKNPQAMNIDSGNESDSA. 642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g04247 641 FunFam FACT complex subunit SSRP1 540 634 - -
Seca10g04247 641 FunFam Fact complex subunit ssrp1 199 338 - -
Seca10g04247 641 CDD HMG-box_AtSSRP1 553 628 - -
Seca10g04247 641 PANTHER FACT COMPLEX SUBUNIT SSRP1 1 610 - -
Seca10g04247 641 FunFam FACT complex subunit SSRP1 339 447 - -
Seca10g04247 641 PRINTS Structure-specific recognition protein signature 219 235 IPR000969 GO:0003677|GO:0005634
Seca10g04247 641 PRINTS Structure-specific recognition protein signature 374 391 IPR000969 GO:0003677|GO:0005634
Seca10g04247 641 PRINTS Structure-specific recognition protein signature 264 280 IPR000969 GO:0003677|GO:0005634
Seca10g04247 641 PRINTS Structure-specific recognition protein signature 356 374 IPR000969 GO:0003677|GO:0005634
Seca10g04247 641 PRINTS Structure-specific recognition protein signature 241 257 IPR000969 GO:0003677|GO:0005634
Seca10g04247 641 PRINTS Structure-specific recognition protein signature 329 342 IPR000969 GO:0003677|GO:0005634
Seca10g04247 641 PRINTS Structure-specific recognition protein signature 416 434 IPR000969 GO:0003677|GO:0005634
Seca10g04247 641 PRINTS Structure-specific recognition protein signature 400 416 IPR000969 GO:0003677|GO:0005634
Seca10g04247 641 Gene3D High mobility group box domain 540 636 IPR036910 -
Seca10g04247 641 MobiDBLite consensus disorder prediction 598 641 - -
Seca10g04247 641 Pfam Histone chaperone Rttp106-like 350 439 IPR013719 -
Seca10g04247 641 MobiDBLite consensus disorder prediction 627 641 - -
Seca10g04247 641 FunFam FACT complex subunit SSRP1 1 93 - -
Seca10g04247 641 Pfam POB3-like N-terminal PH domain 7 99 IPR035417 -
Seca10g04247 641 SUPERFAMILY PH domain-like 206 440 - -
Seca10g04247 641 Gene3D - 95 179 IPR038167 -
Seca10g04247 641 MobiDBLite consensus disorder prediction 598 622 - -
Seca10g04247 641 Pfam Structure-specific recognition protein (SSRP1) 106 174 IPR024954 -
Seca10g04247 641 SMART hmgende2 556 626 IPR009071 -
Seca10g04247 641 MobiDBLite consensus disorder prediction 506 548 - -
Seca10g04247 641 Pfam HMG (high mobility group) box 557 625 IPR009071 -
Seca10g04247 641 MobiDBLite consensus disorder prediction 470 564 - -
Seca10g04247 641 Gene3D - 339 447 IPR011993 -
Seca10g04247 641 Gene3D - 1 93 IPR011993 -
Seca10g04247 641 FunFam FACT complex subunit SSRP1 96 179 - -
Seca10g04247 641 CDD PH2_SSRP1-like 342 441 - -
Seca10g04247 641 SUPERFAMILY HMG-box 544 626 IPR036910 -
Seca10g04247 641 Gene3D - 199 338 - -
Seca10g04247 641 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 557 625 IPR009071 -
Seca10g04247 641 SMART Rtt106_2 348 441 IPR013719 -
Seca10g04247 641 MobiDBLite consensus disorder prediction 474 488 - -
Seca10g04247 641 CDD PH1_SSRP1-like 207 340 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g04247 Seca-Chr10 95884147 95890076 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g04247 553 625 ARID Transcription Factor Family AT1G04880 39.726 1.76e-09 58.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Seca10g04247 POB3_N 2.2e-23 CL0266
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g04247 K09272 - gmx:100805034 1107.05