Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g04242 ATGGTTTCTCATAACATTTTCTACCTCTTCATCCTTGTTAGCTTCCTTAGTTTTTCAACTAATAAAGCACAGGACGACCCTTTTTATCTCTACCAATACTGCTCCAGCGACAGAACCACTGCTAATACCTCCTTCCAATCCAACATTAACACCCTCCTTTCTTCCTTGTCATCTAACGCCACGGGCAACACCCAATTCTACAACACCACATTCATTGGAAATAACCCCTCTAACCCAATCTATGGCGTGTTCATTTGCAGGGGTGATGTTCCCTCTAACCTCTGCCAACAATGCATCATAAATGCAACCCAGCGACTATCCTCACAGTGCTCGTTGTCTAAACAAGGTCTGATTTGGTACGACGAGTGCATGGTGTGGTATTCCCCCAACTCTTTCTTCACCTCTGTGAACGTAACCGCTAGTGTTTATCTGTTGATTAACACTGCGAATGTCTCAAACCCGAAAACCTTCACGCCTTTATTGTTTGAAACAATGAACCAAACCGCAGAAGAAGCAGCCCGACCTCCTATTGGTGACAAGAAGTTTGCCACAAGGCAAGTAACCACCTCAGAATTTCAGTCCCTATACTGTCTAGCTCAGTGCATACCAACCTTGTCACCCCACGATTGCAGAACCTGTCTCAGTGGAAGGATATTGGAACTTCAATGGTGCTGTGAAGAAAGGGCGGGAGGGAGAGTTATAAATCCTTCTAAACGCAACGAATCGAATATCCTCAGAGTGTCGTTTATTCCAAGAGGGTATAATTTGGTACAGCCACTCACTAACTCCTCCAACCAGGAACAGAACTCGTTCGCTGTTACATTGTCAACAACGCTAAATAGAGCGGCAATCGAGGCAGGGAACCGTAATGAGAGATATGCAATAAAATCATGGAAATTGAATGAGTTACAAACGCTATATGCTCTTGTTCAATGTACGCAAGATTTGTCTAGTGATGAATGCAATGGCTGTCTAGAAGATTTGATTCGAACAGCAATTCCATGGCCTCGTTTGGCAAGCATAGGAGGAAGAGTTCTATATCCTAGCTGCAACATCAGATTTGAATTCTTCCAATTTTACCGGGATGATGAGGAAGCACAGCCGCCAGAACCAAGGAGTCCTTCTCCATCAGAACCTACAGCCACAGAAAAAAGGAAAGGTCGATTGCGAACAATAGTCTTGATCGTGGTGCTCACATTTGTTTCGGTGATGCTATTCTCTTGTGGATACTATTTACTCTTGAGAATAGCAAGAAAGAGTTATAAAACTATTCTCATAGAAAATTGTGCCACTATAGAGTCATTGCAATTCAATCTGGCTCTAATTCAAGTAGCAACTGACAACTTCTCTTGCGAGAATAGAATTGGTAGAGGTGGATTTGGAGAAGTTTACAAGGGCATTATTGATGGACAACAAGTAGCTATAAAAAGACTTTCAAGAGGCTCCAAACAAGATTCCCAACAAAAAAAGTTGCTAAGCTGGTCTGAACGTTACAACATTATAGGAGGGATTGCTCAAGGAATTCTTTATTTGCACGAACATTCCCGACTTAAAGTTATACATCGTGATCTGAAACCCAGTAATGTTCTATTAGATGAAAATATGATTTCGAAAATTTCAGATTTTGGTTTGGCTAGAATGATTGAAATAAATGAAGACCAAGGAAATACAAGTAGAATTGTTGGAACGTTTGGTTATATGTCTCCAGAATATGCAATGTTCGGGCAATTTTCTGAGAAATCAGATGTTTTCAGTTTTGGAGTCATGCTTTTAGAGATTATTACAGGGAAAAAGAATCTAAATTCTTCTGAATCACATTGTTTTGTTGATGGCCTCCTGAGTTATGTTTGGAGGCAATGGAGACTTCAAAGACTATTGCACGTATTAGACTCAGATATCAAAGAAAATTGCTCTGAATTTGAAGTCATTAAGTGCATTCAGATTGGTTTATTATGTGTTCAACAGAATCCTGATGCAAGACCTACAATGATATCGATTGTTTCATATCTTAGTAGTCATTTAACTGAGTTGCCAACTCCAAGAGAACCTACATTTTTCTTACACAGTGGAACGAATCTAGAATCAATGGCACCTGAATCAAGTTCTAATCAAAATATCAACAATCCTAAACCATTTTCTAATGATGAACTATCTATAAGTGAATTGCTTCCTCGATAG 2178 0.3994 MVSHNIFYLFILVSFLSFSTNKAQDDPFYLYQYCSSDRTTANTSFQSNINTLLSSLSSNATGNTQFYNTTFIGNNPSNPIYGVFICRGDVPSNLCQQCIINATQRLSSQCSLSKQGLIWYDECMVWYSPNSFFTSVNVTASVYLLINTANVSNPKTFTPLLFETMNQTAEEAARPPIGDKKFATRQVTTSEFQSLYCLAQCIPTLSPHDCRTCLSGRILELQWCCEERAGGRVINPSKRNESNILRVSFIPRGYNLVQPLTNSSNQEQNSFAVTLSTTLNRAAIEAGNRNERYAIKSWKLNELQTLYALVQCTQDLSSDECNGCLEDLIRTAIPWPRLASIGGRVLYPSCNIRFEFFQFYRDDEEAQPPEPRSPSPSEPTATEKRKGRLRTIVLIVVLTFVSVMLFSCGYYLLLRIARKSYKTILIENCATIESLQFNLALIQVATDNFSCENRIGRGGFGEVYKGIIDGQQVAIKRLSRGSKQDSQQKKLLSWSERYNIIGGIAQGILYLHEHSRLKVIHRDLKPSNVLLDENMISKISDFGLARMIEINEDQGNTSRIVGTFGYMSPEYAMFGQFSEKSDVFSFGVMLLEIITGKKNLNSSESHCFVDGLLSYVWRQWRLQRLLHVLDSDIKENCSEFEVIKCIQIGLLCVQQNPDARPTMISIVSYLSSHLTELPTPREPTFFLHSGTNLESMAPESSSNQNINNPKPFSNDELSISELLPR. 726
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g04242 725 MobiDBLite consensus disorder prediction 695 725 - -
Seca10g04242 725 MobiDBLite consensus disorder prediction 695 715 - -
Seca10g04242 725 Pfam Salt stress response/antifungal 265 355 IPR002902 -
Seca10g04242 725 Pfam Salt stress response/antifungal 34 128 IPR002902 -
Seca10g04242 725 Pfam Salt stress response/antifungal 152 232 IPR002902 -
Seca10g04242 725 Gene3D Transferase(Phosphotransferase) domain 1 427 483 - -
Seca10g04242 725 ProSitePatterns Serine/Threonine protein kinases active-site signature. 519 531 IPR008271 GO:0004672|GO:0006468
Seca10g04242 725 FunFam Cysteine-rich receptor-like protein kinase 25 255 359 - -
Seca10g04242 725 Pfam Protein tyrosine and serine/threonine kinase 488 670 IPR001245 GO:0004672|GO:0006468
Seca10g04242 725 ProSitePatterns Protein kinases ATP-binding region signature. 455 476 IPR017441 GO:0005524
Seca10g04242 725 ProSiteProfiles Protein kinase domain profile. 389 685 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g04242 725 FunFam cysteine-rich receptor-like protein kinase 10 482 677 - -
Seca10g04242 725 ProSiteProfiles Gnk2-homologous domain profile. 27 132 IPR002902 -
Seca10g04242 725 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 34 487 - -
Seca10g04242 725 Gene3D - 27 132 IPR038408 -
Seca10g04242 725 Gene3D - 255 359 IPR038408 -
Seca10g04242 725 Gene3D - 138 239 IPR038408 -
Seca10g04242 725 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 27 131 - -
Seca10g04242 725 FunFam Cysteine-rich receptor-like protein kinase 25 141 243 - -
Seca10g04242 725 ProSiteProfiles Gnk2-homologous domain profile. 139 252 IPR002902 -
Seca10g04242 725 Gene3D Transferase(Phosphotransferase) domain 1 484 682 - -
Seca10g04242 725 PIRSF SRK 484 722 IPR024171 GO:0004674
Seca10g04242 725 PIRSF SRK 33 277 IPR024171 GO:0004674
Seca10g04242 725 PIRSF SRK 257 488 IPR024171 GO:0004674
Seca10g04242 725 SUPERFAMILY Protein kinase-like (PK-like) 435 703 IPR011009 -
Seca10g04242 725 MobiDBLite consensus disorder prediction 365 384 - -
Seca10g04242 725 ProSiteProfiles Gnk2-homologous domain profile. 253 359 IPR002902 -
Seca10g04242 725 SMART serkin_6 449 670 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g04242 Seca-Chr10 95727527 95741203 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g04242 201 725 Receptor kinase-like Gene Family AT4G23280 37.912 7.91e-114 355
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca10g04242 PK_Tyr_Ser-Thr 1.6e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g04242 - - gmx:100807113 589.341