Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g04224 ATGCCATCACGGCAACTCTCTCAATCTCAGCCGTCCACGTCAGACTTACCTGACCCATTCTCACCGCCACAAACACCACCTCCTCCCCACCCCCACCGCCATCACAACCTCCTTACTCCTCTCCTCGCCGCCACCGCCTCCGCATGCTCCCTCCTCCTCCTCGCCCTCCTCTGCCGCCGCACCCTCACCCGAAAACGCACCGCCCCATTCTCCTCCGACACCGACTCCTCCACCTCCTCCCCACCCCACCGCCTCTCCTACTCCCTCCTACGCCGCGCCACCGACTCCTTCTCCTCCCGCCTCGGCCACGGCGGCTTCGGCTCCGTCTTCGCCGGCACCCTCCCACCGCCGTCACGAAAACCCATCGCCGTCAAGCTCATGGACTCATCCTCCCACCAGGGCGAACGTGAGTTCCAAAACGAACTCTTCTTCGCCTCAAGGCTCCGTTCAAGCCACGTCATCGCTGCGGTTGGGTTTTCCTCAGACCCGAAACGACGCCGTTTCCTCCTCGTTTACGACCTCATGCAAAACGGTAACCTCCAAGACGCGCTCTTGCGACGCAAGTGCCCTGAACTCTTCGATTGGAACAAGCGCTTTGCCATTGTGTTGGACATAGCTAAAGGAATTCACTACCTTCACTCTTGTGACCCTCCAATTATCCATGGAGACATAAAACCTAGTAACATCTTGCTGGATCGTGATTTCTCAGCAAAAATTGGGGATTTTGGACTTGCCCGTTTGAAATTGGAGCCACCCCATGTTGAATTGGACATTTTAAGTAACAATGATGAAGAAAAGAAGAAGAAAGAAGAAGTGGAGTGTGATGGTGTTGGGGTTGTGATTGATGATTGTGTATCAGTGGAAAGTGTGCATACTGGTTTTTTGGAAAAGGGTCATTTGGGTGTGGACCAATCCCCTACTTCGCCGGAGACAATGGCGATAACCGCCTCCCCGGAGATGGGTTTGGCGATGGCTGCATCGCCGGGGTTTGATAAGGCTAGTGTGCAGAGTGAGAAGGATGTTGATGTTGTTGGAGGTTTTAAGAGGAATGGTAAAGGGCTAAAGAGTAATTCAGTGAGGGATTGGTGGTGGAAACATGACAATGAGGCTCCGGTTGGTGAAGCTAAGAAGGTGAAGGATTATGTGATGGAGTGGCTTGGGAGGGAGGTGAATAAGGAAGGGACCAGTAAGAGTGAATTGGTAGGAGGGAAACCAGAGAAGAAGAACAAGAAGAAGAGCAAGAAGCAAGAATTGGAATGGTGGGAATCCATGGATGAGGAAAATGTTGGTGAGGTTTTGAGGAAGCAGAGGAGAAGGCCAGTGAGGGAATGGTGGAAGGAGGAGCATTGTGAAGAGGTTGAAAAGAAGAAAAAAAAGAAGAAGAAAAAGGGTATAGATAGTGATGACAATGTTGATGATTGGTGGGTGAGTGATGATGCATCATTATATGGGGATAGAAAGAAGAAGATTAAGAGCAGAAGCAGGAATAACCGTGGTAGTGTAGATTGGTGGTTAGAAGGGTTCAGTGGAGAGCTATGGAGAGCACGCAGGAATAGCTTTGATTCTGTTAGTGGAGAAATTCCAAAGAGTGGTGGTGTGAGTAGTACTCCAAGTATGAGAGGAACTGTTTGTTATGTTGCTCCTGAGTATGGCTATGGTGGAGAAGTTTCAGAGAAGTGTGATGTATATAGCTTTGGGGTTTTATTGCTTGTTATCATTTCTGGGAGGCGTCCACTTCAGGTAACTGGTTCACCAATGTCAGAGTTTCAAAGAGCAAATCTTTTGTCATGGGCACGCCATTGTGCAAGGAATGGGAAGCTCATTGAGCTGGTTGATCAGTCCATTCAATCATTGGATAAAGAGCAGGCTCTTCTCTGTATCAAGGTGGCTTTGCTTTGTTTGCTTAAGATACCTGCTCGTCGTCCTTCAATGAAGGAGGTTGTGGGAATGCTTAGTGGTGAATTGGAGCCACCCCAATTGCCTGTTGAGTATTCACCTTCAACCCCTAATCGGTTCCCTTTCAAGTCTAGGAAAAAAGTCCGGTGA 2046 0.4966 MPSRQLSQSQPSTSDLPDPFSPPQTPPPPHPHRHHNLLTPLLAATASACSLLLLALLCRRTLTRKRTAPFSSDTDSSTSSPPHRLSYSLLRRATDSFSSRLGHGGFGSVFAGTLPPPSRKPIAVKLMDSSSHQGEREFQNELFFASRLRSSHVIAAVGFSSDPKRRRFLLVYDLMQNGNLQDALLRRKCPELFDWNKRFAIVLDIAKGIHYLHSCDPPIIHGDIKPSNILLDRDFSAKIGDFGLARLKLEPPHVELDILSNNDEEKKKKEEVECDGVGVVIDDCVSVESVHTGFLEKGHLGVDQSPTSPETMAITASPEMGLAMAASPGFDKASVQSEKDVDVVGGFKRNGKGLKSNSVRDWWWKHDNEAPVGEAKKVKDYVMEWLGREVNKEGTSKSELVGGKPEKKNKKKSKKQELEWWESMDEENVGEVLRKQRRRPVREWWKEEHCEEVEKKKKKKKKKGIDSDDNVDDWWVSDDASLYGDRKKKIKSRSRNNRGSVDWWLEGFSGELWRARRNSFDSVSGEIPKSGGVSSTPSMRGTVCYVAPEYGYGGEVSEKCDVYSFGVLLLVIISGRRPLQVTGSPMSEFQRANLLSWARHCARNGKLIELVDQSIQSLDKEQALLCIKVALLCLLKIPARRPSMKEVVGMLSGELEPPQLPVEYSPSTPNRFPFKSRKKVR. 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g04224 681 MobiDBLite consensus disorder prediction 1 15 - -
Seca10g04224 681 SMART serkin_6 95 651 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g04224 681 MobiDBLite consensus disorder prediction 16 34 - -
Seca10g04224 681 MobiDBLite consensus disorder prediction 1 36 - -
Seca10g04224 681 Gene3D Transferase(Phosphotransferase) domain 1 520 658 - -
Seca10g04224 681 Gene3D Transferase(Phosphotransferase) domain 1 175 273 - -
Seca10g04224 681 ProSitePatterns Protein kinases ATP-binding region signature. 101 125 IPR017441 GO:0005524
Seca10g04224 681 ProSitePatterns Serine/Threonine protein kinases active-site signature. 219 231 IPR008271 GO:0004672|GO:0006468
Seca10g04224 681 Gene3D Phosphorylase Kinase; domain 1 69 174 - -
Seca10g04224 681 Pfam Protein tyrosine and serine/threonine kinase 537 649 IPR001245 GO:0004672|GO:0006468
Seca10g04224 681 Pfam Protein tyrosine and serine/threonine kinase 97 248 IPR001245 GO:0004672|GO:0006468
Seca10g04224 681 SUPERFAMILY Protein kinase-like (PK-like) 72 669 IPR011009 -
Seca10g04224 681 MobiDBLite consensus disorder prediction 392 417 - -
Seca10g04224 681 PANTHER OS07G0586332 PROTEIN 1 681 IPR044576 -
Seca10g04224 681 ProSiteProfiles Protein kinase domain profile. 95 660 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g04224 681 MobiDBLite consensus disorder prediction 659 681 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g04224 Seca-Chr10 95257407 95259476 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g04224 529 648 Receptor kinase-like Gene Family AT3G58690 33.333 9.63e-11 62.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XI Seca10g04224 PK_Tyr_Ser-Thr 8e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g04224 - - lja:Lj2g3v0473820.1 898.656