Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g04223 ATGTTTCCTTTACAACGAGGCAATGAGCTGGTTATCCAGTTTTCTAATAGCCCCCACCAAGAGCAGCAACACAAAATCTCTGAAGATCTGATTCTGGATCATGATTATGTTCCTCTCAGTGTCAATGATAATTCTGATAAACAATTCAGAAGCAGCCACCCACAGAAACTATTTTATGGCACTGAAAAGAACAATCATGGTAATTCTAATGATCATAAGAAGAAGAAGATGGTTCATAGGGAGATTGAGAGGCAAAGGAGGCAAGAAATGGCTACCTTTTATTCATCTCTTAGATCCCTTCTCCCTCTTGAGTTCATCAAGGGAAAGCGTTCAATATCTGACCACATGAATGAGGCAGTGAATTACATAAAACACATGGAGAATAAAATCAAAGAACTTGGTGCCAAGAGAGAAGAACTGAACAAGATGGAAAACCATGAGATCAATAATCATACATCTGGGAACTTCACTATCCACCACAATAATGGTATTCTGGGAATAGAAATTACAAGTGGTGGTGGTTTGAAAGAGGAAAGACTCAAACTTTCAAAGTTACTACAATTGCTGCTTGAAGAAGGACTTGAAGTTGTTAGTTGCCTTTCAAACCAAGTCAATGGCAGATTGCTTCACAGTGTCCAGTTTGAGGTATGGAATACAGTTTTTTTCCCCCATTTTATAATTTTTTGTGTAAATTTTAAAGTTAACAATTCCAACAGTGTAGATCTATCTGAGCTGAGAAGGAAAATTGCCAATGTAATTCCGACATTAAGATGTTCTGATTCTGATTAG 789 0.3726 MFPLQRGNELVIQFSNSPHQEQQHKISEDLILDHDYVPLSVNDNSDKQFRSSHPQKLFYGTEKNNHGNSNDHKKKKMVHREIERQRRQEMATFYSSLRSLLPLEFIKGKRSISDHMNEAVNYIKHMENKIKELGAKREELNKMENHEINNHTSGNFTIHHNNGILGIEITSGGGLKEERLKLSKLLQLLLEEGLEVVSCLSNQVNGRLLHSVQFEVWNTVFFPHFIIFCVNFKVNNSNSVDLSELRRKIANVIPTLRCSDSD. 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g04223 262 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 63 235 - -
Seca10g04223 262 MobiDBLite consensus disorder prediction 58 81 - -
Seca10g04223 262 FunFam Transcription factor bHLH126 66 154 - -
Seca10g04223 262 Pfam Helix-loop-helix DNA-binding domain 75 127 IPR011598 GO:0046983
Seca10g04223 262 CDD bHLH_AtORG2_like 75 151 - -
Seca10g04223 262 Gene3D - 65 154 IPR036638 GO:0046983
Seca10g04223 262 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 73 143 IPR036638 GO:0046983
Seca10g04223 262 MobiDBLite consensus disorder prediction 66 81 - -
Seca10g04223 262 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 74 126 IPR011598 GO:0046983
Seca10g04223 262 Coils Coil 116 146 - -
Seca10g04223 262 SMART finulus 80 132 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g04223 Seca-Chr10 95224087 95225592 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g04223 56 222 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G51780 39.888 3.29e-36 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca10g04223 HLH 1.2e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g04223 - - gmx:100780888 298.901
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g04223 10 95224087 95225592 Seca10g04223 10 95224087 95225592 ECH
Seca10g04223 10 95224087 95225592 Seca8g07474 8 171763755 171767573 PCT