Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g04216 ATGGATGAAAACAAGAAGTGGATGCATAAGGAAACAGAAAGACAAAGAAGGCAAGAGATGGCCCAACTCTGCACCACACTTAGATCCCTTCTGCCTTTAGAATATATTAAGGGAAAGCGCTCAACTTCTGATCATGTGTTTGAGGCTATCAATTATATCAACCATCTACAGAATAAGGTGAAGCAATTGGAAGCTAAGAAGGATGAATTAATAAAGTTGGTGCCTAATTTGAGTACTAATATTGACCCTGATGAAAGTGAAAGCTCTACTAGCAATCTTCCACCTTTTGTTAATATTCAACCTTTTCATGGAGGCCTTGAGATTATGTGCAGTTGCAACATGTTTCCTTTGTCAAGAATTCTAGAGATATTGCTTGAAGAAGGGATTAATGTTGTTAGCAGTACTTCCACCAAAATGGATGGTAGATTCATACACACTATACGATCAGAGGATCCAATTCATCCAAATATGAGTGGCACTGATTACTCTGAGCTGCAAAGAAAGCTTATGGAAGCAATATCATCTTCAAGTTTGCAAGAGACTTTGCCTGCTGAACCTGAAAATTGCTAA 570 0.3807 MDENKKWMHKETERQRRQEMAQLCTTLRSLLPLEYIKGKRSTSDHVFEAINYINHLQNKVKQLEAKKDELIKLVPNLSTNIDPDESESSTSNLPPFVNIQPFHGGLEIMCSCNMFPLSRILEILLEEGINVVSSTSTKMDGRFIHTIRSEDPIHPNMSGTDYSELQRKLMEAISSSSLQETLPAEPENC. 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g04216 189 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 3 75 IPR036638 GO:0046983
Seca10g04216 189 CDD bHLH_AtORG2_like 5 74 - -
Seca10g04216 189 Pfam Helix-loop-helix DNA-binding domain 6 57 IPR011598 GO:0046983
Seca10g04216 189 Coils Coil 46 80 - -
Seca10g04216 189 FunFam Transcription factor bHLH126 1 84 - -
Seca10g04216 189 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 4 172 - -
Seca10g04216 189 SMART finulus 10 62 IPR011598 GO:0046983
Seca10g04216 189 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 4 56 IPR011598 GO:0046983
Seca10g04216 189 Gene3D - 1 85 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g04216 Seca-Chr10 95062672 95064181 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g04216 9 173 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G25410 42.197 3.40e-36 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca10g04216 HLH 3.5e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g04216 - - ccaj:109791323 282.337
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g04216 10 95062672 95064181 Seca10g04216 10 95062672 95064181 ECH
Seca10g04216 10 95062672 95064181 Seca8g07472 8 171732306 171733742 PCT