Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g04183 ATGTCTATGCAAGTGCCTAGACCAAATTTGAACAGGAGACTTTTCAAATCCCCAGGTTCAGTCAGCTATAAAAGGTTGCTTCCATTTTTAATGAGCTTACCAAAGATGGCTCAGAGAGAGATAGAAGACTTTGGTCACCGTTGTAATCAAAACCCAAAGTCCCTCATAGTTTCCACCATGTCTAATCAAATCACCGATCCCTACCAGCACCTCAAAATCGTCCTCAACCCCGACGGCACCAAAGATGTCACCATCAACCAATCCAACAACACTTGGGCTCGATTATTCCTACCTCAAAATCAAATTTCCGCTTCCAACCACAAATTACCCCTCATTGTTTTCTTCCACGGAAGTGGCTTCATTGTAGCGAGTGCTGCATCGACCATGTTCCATGATTTCTGTGTGAGTATGGCAGATACGGTTGGAGCTGTCATTGCCTCGGTTGAGTACCGCCTTGCGCCTGAGCACCGCTTGCCGGCAGCTTATGATGATAGTCCAGTTTTTCGTTTACGTACAGTAGAAGAGGTGAATAATCTGGAGCCATTGAAAATCCAAGGGTTGATATTGCGCCAACCATTCTTTGGTGGGACCAAGAGGAGTGGGTTAGAGTTAAGGCTTAAGAATGATCCTGCTTTTCCATTGTGTGTTAATGATTTACTGTGGGAGTTGGCGTTGCCAACTGGGGTTAACCGTGATCATGAGTATTCCAATCTAACGGCTGGGGATGGTCTTGATGAGAAACTGGATAAAATTAGGGAGTTTGGGTGGAGGGTGTTGGTGAGTGGGAACGGTGGTGACCCATTGGTGGATTGTGAGAAGGAGTTGGTACAGTTAATGGAGGAGAAAGGTATCCGAGTGGTGAGTGACTTCGAGGAAGAAGGCTTTCACACTATGAAGGGAAAGCTTCAGAGCGCGTGGAGGTTAGGAGGGGAGTTTGATCTAATGGATGTAGGGAATGGTTTCTTTATCGTTAAGTTTCACCGAGCGGAGGATCGATGCAAGGTTTTAGATAATGGTCCGTGGATGATCTTTGATCATTATTTATCGATTAGACCTTGGGTTCCAGATTTTGTCTCATCAGAAGCAAAAATAGAAAGAGCCTTACTGTGGGTTCGCTTCCCTAGCCTAGGCCTGGAGTACTATGATGAGAGCATTCTGATGGCATTAAGAGCTGCTGTAGGAAAACCGTTGAAGGTGGATTCTATGACTATGGATGTAGCTAGAGGATGCTTTGCTCGAGTTTGCGTTGAAATTGAATTAGATCGCCCTGTGGTTGGGAAAGTTTGGTTCCGTGATCACTGGTACAAGAATGCGACATCTGGCGAGGCTAAGAAGGAGGGCGGCGGAGGAACACCAGTCGAGCATGCTACTCCTAGCGTGGATGGGGGAGATAAGAATCTTCACGGGGATTGGCTCCTAGTTACCAAAAATAAGAGAGCAAGCAAATCAAAGGCAAAATCAGGGGACAATAATGAGCACGAGGGAGAATCATCTAAGAGATTCACGTTTCAGTCTGAAGGGCCTAAGCTTTGGACACGTAAAAAACGCCAACGGAAGGAACCTACACCTGTCCAACCCAAGATCTTCACTGAGTCTTACTATAAGGGCATTTTAGACCGCTCTCGGGGTACAGTTCAGCCACGTGTTGCCTCTTCTACACCCGCAGCTCAAGTGGCACGTGATACGTCCACTCCAAATGTAGCCCCCACTCCTTCTCAGAGAAACATGGGAAAAGGCAAGTCTAAGGAGACTGCACCCCTCCCGCATGGGATTAGGACAACAATGAATGTCAAGGTAATTGCACCAAATCGCCTTCAATTCGTGGACGAACCAGACCCCCTGATCCTGCGAGCAATGCCGAGTTGGGAGCTATGGTGGCCTCGACCAGTAACATGGGCAATGCGAGCAACTCCATGGAGGAAGATGGATGTTTCTATTCTCTCCTGGAATGTCCGTGGTGCAGTTAGCAAGCGATGCCATCGTCATATTCGTCAGGTTATCATGCGATTGCATCCCACCATCATGTTTATTTTCGAAACCCACGTTCCTTTTACTAAGACGAGTTCGTTTTGGAGAAGGGAAGGATATGAGGCAGTGGCCATTGAAGAAGCCCATGGCCATTCTGGGGGTATTTGGGCCCTAGTGAAAGCAAATTGTGGTGTCCTAGTGCAGAAGGTTGATTCTGGGCCTCATGTGATTTTGCTGCTTATTTCATCAGGGGGAGAGGACTTCGTTTGTTCGGGTGTTTATGCAAGTCCGAATATCTTACATCGTCGTATTCTCTGGAACCATTTATCTCAACTCAAATTGATTTTTCAGGTTCCTTGGGTCCTTTTAGGGGACTTTAATGACATTCTCTTTGGGTCGGAACAGAGGGGAGGTAACTTTTCTATGTCCCGTGCTAATGAGTGTTTGGAAGCTCTAGATAAATGTGAGCTCTTGGATTTGGGCTATTTTGGCAATAAATTTACTTGGCAAAGACCTTCGGTTGAAGGGAGATTAATTGCTAGAAGGCTTGACCGAGCAGTTGCTGACCATAATTGGCGTACAAAATTCTCAGAAGCTACCCTTGAAGTCATGTGCAGATTATACTCTGATCATAATCCTATTTTACTCCGTTGCGGCCCTATGCGTAGGAGACGGGGGGAAAGGCCCTTCCGATTTGAAGCGGCTTGGGCATCTCATTCTACTTATGGTGAAATAGTTAAACAAGATTGGCTGAGTAAGGAGGGTAAGGTTCTCGAGGCCCTGATTGCCACGAAGGAAGAATCCATCAAATTCAACGAGGAGGTATTCAGCAACATCTTTCAAAGGAAAAAGAGCTTGGAATCCAGAATCAAAGGTATTCAGAAGACCCTGGAGACGGTGGACTCTGCTTTTCTCATTCGGCTTCAAGGGGAGTTACTTTGTGAATATAATCATGCTATTCTCCAGGAAGAAATCCACTGGTTCCAAAAATCAAGGGAACAGTGGATTAAATTTGGAAACAAGAATACTGCTTTTTTCCATACTCAGACGGTGGTGCGGAGATGTCGTAATCATATTAATGGTCTTTTTCTTCCGGATGGGGAATGGTGCTCTGATGGGGATATTTTGGAGCGTGAGGCTTCATCCTTCTTCAAGAAGATGTTTTGTACTAGGGAGGCTAGTGGTGGCACCATTCACACCCCACATATGCCAAAGTTGACCGGTGATAATATTCAGACTCTTATCTCTTCTGTCTCTAAGGAGGAGGTGTTCCATGCTCTCATGTCTATGAAATCTTATATAGCCCCTGGTCTGGATGGTTTTCATCCCATTTTCTATAAATTATATTGGGCCATTATTGGAGATGATGTGTGGAGGCTTGTCAGTGATGCTTTCACTTCAGGTATGATTGATGCCAAGCTTGCGGAGACTTTAATTGTTCTTATTCCCAAGGTGGATGATCCTACTTCTTTCAAAGACTTCAGGCCCATCAGCTTATGCAATATTATTTACAGGCTCATTACTAAAGTGCTAGTAAATAGAATTCGGTGTTTCATTGGCTCCCTCATCAGTCCTCTCCAGAGTAGCTTTATTCCGGGTCGGAGTACAACGGATAATGCCATCATTCTCCAGGAGGTGCTTCATTATATGCACATCTCTAAAAAGAAAGTGGGTGATATAGTTTTCAAACTTGACTTAAAAAAAGCTTATGATCGTGTGGATTGGGCTTTCTTACAACAGGTTCTTTTTTACTACAATTTTCCTGCTATTACTGTTAAGCTGATTATGAACTGTGTTTCTTCCTCTTCCCTCATCCTTCTCTGGAATGGAAATCGATCTTCATCCCTTACCCCTCTTAGGGGTCTCAGGCAGGGTGACCCTCTCTCTCCGTATTTATTTGTGTTATGCATGGAGAAACTGGGGCTTATGATAAACCAGGCTGTTCAGGACAGGCCTAGGAAGTCCCAAATCCGTCTACTGAAGACTATCCTTGAGGAGTTTTGCTCTAAATCTGGACTGAAGATTAATATTTATAAATCTCGTGCTCTAGCCTCTAAATCGGTGAACACCGCTAAGCGTAACAGGCTTCAGGGGGTTTTTGAAATTAAGTTCACAGGTTGTTTGGATAAATATTTGGGCTTTCCTATGTTTCAAGGGTGTCCTAGGAGAGAGACTTTCCAACCCATTTTGGACCATATTCGCTCTAAATTGGCTTCATGGAAAGGCCGTCTCCTATCCAAGCCTGGGAGAGTGACGCTTACTAATGCAATTATTTCCTCAATTCCCACCTACAGTATGCAACTTTTTTGGCTTCCGGCTCATGTTTGTTCAAAGCTTGACCAAGTGGCTCGAGATTTTATTTGGAAGGGATCCACTGGGAGAGGGATGAATTTAGTGGGGTGGCACAAGATCACTCGTCCGAAGAGATATGGTGGCTTGAATGTCAAATTAGCTCATTTACAGAATGTTTCTTTGCTTGGAAAGCTTATCTGGGACCTAGTTTTGGGAGTGGATAAATTGTGGGTCACATTATTGTCCAATAAGTACCTCTGCTCTGGGCATATTTTGAATAACTCTAATGCTCGGGGTTCATTGGTGTGGCGCTCTACTCTAAAGGCTCGAGACTTGTTATTACCAGCTTTTAAATTAAAGTTGGGGAATGGGGAGGCAAACATCTGGTACGATAAATGGACGGGAGAAAGGCCTCTTAGTTCGAAAGTATGGGCTGTTGACATTCATGATATTGAAGTTCACGTTAGAGATGTATGGAGGGAAGAAGGTTGGCGTTGGGATTTTCTGTGGACAAATGTTCCGGCTGAGGTTCGTAGCTTAGTCCAAAATTCTCGAGTGCTTATTATTCCTGATCTAAGGGATCAATTTGTCTGGGCCTCCAATATCTCTAGTGCATACTCAGCCAAGAGCGGATATAGGTGGTTGTCTTCTCAGCAAGCTCTTGATGATGATGATAAGGATTGGATGTGGATTTGGCGTCTCTCTGTCCCTGAAAATATCAAGTTTCTCATTTGGTTGATCTGGAAGGACTCTGTTCCTACGAGACTGCTCTTACATCAGAGGCATGTTTCTACTTCACCAAATTGCGCCCGTTGCAATGAGGCGGAGGAGGACGTCCTACACTGCCTCAGAGACCGCAGAGATGTTGTGAAGATTTGGAAACTTTTTGAGGTTGGCTGCTCGAATTTTATGCTCAGCTTGCACGATGTTACGTCTTGGATTGGAGAGGGCATTAAGTCCGGGGGAACGGATTGTGGTAATCGATTACCAGAGAGATTGCATGCAGGTAATCGATTACAGGGATGCTGTAATCGATTACCAGAGTGTTTGGTTGCAAGTAATCGATTACAAGGTGGTTGTAATCGATTACCAGAGACCTTGTTTGCAGAAGGAGTAATGGCTGGGGGTAGGAATGATCGAGCGATGGCCAATGCCTTAATGGCTATGGCACAGGCTGTTGGCAACCTTAACCAACATCACGAGACGGATTGGCTTGCACGGTTCCAGAGGAACCATCCACCTACGTTCCGTGGGGGTTATGACCCCGATGGTGCTGCCGATTGGATATATGAAATCGAGAAGATCTTCAGAGCGATGGACTGCCCTATGCTACAGAAGGTGACGTTAGCAGCATTCATGTTATCAGGGGATGCCGGCTTCTGGTGGCAGAGCACCTGCCAGAGGATGATCGATGAGGGCACAGCGCTGAGCTGGGATAACTTCAAGAGGTTATTCCTGGAGAAGTACTTCCCACATGATGTGCGCAACAAGAAGCAAATAGAGTTTCTGGATTTAAAGCAAGGGGATGGAACCGTGGCAGACTACGCATCAAAGTTTGAAGCACTAGTACGATTCTGCCCGACATATGAAGGAGCTGCTAATGAAGAATCAAAGTGCGTCAAGTTTCTCAGCGGCCTTCGTCCTGAGATTAAACAAGTATTCAACTATCAAGGGATAACGTGCTTTCACGAGCTAGTGAACAAGTGCAGAATTTATGATGAAGACAACCGGGCAAAGGCGGCACATTACAAGAGTGGAGGGCCTTTGAGGAATCAGAACAAGTTCCAAGCGACTAACAAGGGCAAGCCATATTCTCGTGCAACGGGAAATCCCAAGATTGGAGGTGGCAGTGAAGGTACGGTGCAAAAGAAGAATTATGCTCCAGCTGGTGGTCAAGTGTCAAAGGGTGGGAGTGTTAGTTCTACCACTCCTATTACTTGCTTCAAATGCGGAAAGGAGGGTCACCGAGCAAACCGATGCGGAGATAGAGAGGTCACCTGTTACATTTGCCAGGAGAAGGGACATATCTTTTGTGATTGTCCTCAAAAGACACAAGGAACGGTAGCGGCAAGTGGAGATGCCAGTGGGAGCGCCAGTAAACCTAAGGCTACGGGGAGAGTCTTTGCTTTGAGTGGTACTGAAGCTGCCTAA 6411 0.4558 MSMQVPRPNLNRRLFKSPGSVSYKRLLPFLMSLPKMAQREIEDFGHRCNQNPKSLIVSTMSNQITDPYQHLKIVLNPDGTKDVTINQSNNTWARLFLPQNQISASNHKLPLIVFFHGSGFIVASAASTMFHDFCVSMADTVGAVIASVEYRLAPEHRLPAAYDDSPVFRLRTVEEVNNLEPLKIQGLILRQPFFGGTKRSGLELRLKNDPAFPLCVNDLLWELALPTGVNRDHEYSNLTAGDGLDEKLDKIREFGWRVLVSGNGGDPLVDCEKELVQLMEEKGIRVVSDFEEEGFHTMKGKLQSAWRLGGEFDLMDVGNGFFIVKFHRAEDRCKVLDNGPWMIFDHYLSIRPWVPDFVSSEAKIERALLWVRFPSLGLEYYDESILMALRAAVGKPLKVDSMTMDVARGCFARVCVEIELDRPVVGKVWFRDHWYKNATSGEAKKEGGGGTPVEHATPSVDGGDKNLHGDWLLVTKNKRASKSKAKSGDNNEHEGESSKRFTFQSEGPKLWTRKKRQRKEPTPVQPKIFTESYYKGILDRSRGTVQPRVASSTPAAQVARDTSTPNVAPTPSQRNMGKGKSKETAPLPHGIRTTMNVKVIAPNRLQFVDEPDPLILRAMPSWELWWPRPVTWAMRATPWRKMDVSILSWNVRGAVSKRCHRHIRQVIMRLHPTIMFIFETHVPFTKTSSFWRREGYEAVAIEEAHGHSGGIWALVKANCGVLVQKVDSGPHVILLLISSGGEDFVCSGVYASPNILHRRILWNHLSQLKLIFQVPWVLLGDFNDILFGSEQRGGNFSMSRANECLEALDKCELLDLGYFGNKFTWQRPSVEGRLIARRLDRAVADHNWRTKFSEATLEVMCRLYSDHNPILLRCGPMRRRRGERPFRFEAAWASHSTYGEIVKQDWLSKEGKVLEALIATKEESIKFNEEVFSNIFQRKKSLESRIKGIQKTLETVDSAFLIRLQGELLCEYNHAILQEEIHWFQKSREQWIKFGNKNTAFFHTQTVVRRCRNHINGLFLPDGEWCSDGDILEREASSFFKKMFCTREASGGTIHTPHMPKLTGDNIQTLISSVSKEEVFHALMSMKSYIAPGLDGFHPIFYKLYWAIIGDDVWRLVSDAFTSGMIDAKLAETLIVLIPKVDDPTSFKDFRPISLCNIIYRLITKVLVNRIRCFIGSLISPLQSSFIPGRSTTDNAIILQEVLHYMHISKKKVGDIVFKLDLKKAYDRVDWAFLQQVLFYYNFPAITVKLIMNCVSSSSLILLWNGNRSSSLTPLRGLRQGDPLSPYLFVLCMEKLGLMINQAVQDRPRKSQIRLLKTILEEFCSKSGLKINIYKSRALASKSVNTAKRNRLQGVFEIKFTGCLDKYLGFPMFQGCPRRETFQPILDHIRSKLASWKGRLLSKPGRVTLTNAIISSIPTYSMQLFWLPAHVCSKLDQVARDFIWKGSTGRGMNLVGWHKITRPKRYGGLNVKLAHLQNVSLLGKLIWDLVLGVDKLWVTLLSNKYLCSGHILNNSNARGSLVWRSTLKARDLLLPAFKLKLGNGEANIWYDKWTGERPLSSKVWAVDIHDIEVHVRDVWREEGWRWDFLWTNVPAEVRSLVQNSRVLIIPDLRDQFVWASNISSAYSAKSGYRWLSSQQALDDDDKDWMWIWRLSVPENIKFLIWLIWKDSVPTRLLLHQRHVSTSPNCARCNEAEEDVLHCLRDRRDVVKIWKLFEVGCSNFMLSLHDVTSWIGEGIKSGGTDCGNRLPERLHAGNRLQGCCNRLPECLVASNRLQGGCNRLPETLFAEGVMAGGRNDRAMANALMAMAQAVGNLNQHHETDWLARFQRNHPPTFRGGYDPDGAADWIYEIEKIFRAMDCPMLQKVTLAAFMLSGDAGFWWQSTCQRMIDEGTALSWDNFKRLFLEKYFPHDVRNKKQIEFLDLKQGDGTVADYASKFEALVRFCPTYEGAANEESKCVKFLSGLRPEIKQVFNYQGITCFHELVNKCRIYDEDNRAKAAHYKSGGPLRNQNKFQATNKGKPYSRATGNPKIGGGSEGTVQKKNYAPAGGQVSKGGSVSSTTPITCFKCGKEGHRANRCGDREVTCYICQEKGHIFCDCPQKTQGTVAASGDASGSASKPKATGRVFALSGTEAA. 2137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g04183 2136 Pfam Domain of unknown function (DUF4283) 293 416 IPR025558 -
Seca10g04183 2136 MobiDBLite consensus disorder prediction 2003 2061 - -
Seca10g04183 2136 SUPERFAMILY DNA/RNA polymerases 1074 1337 IPR043502 -
Seca10g04183 2136 PANTHER REVERSE TRANSCRIPTASE ZINC-BINDING DOMAIN-CONTAINING PROTEIN-RELATED-RELATED 742 1716 - -
Seca10g04183 2136 Pfam zinc-binding in reverse transcriptase 1626 1705 IPR026960 -
Seca10g04183 2136 SUPERFAMILY alpha/beta-Hydrolases 73 298 IPR029058 -
Seca10g04183 2136 Gene3D alpha/beta hydrolase 169 305 IPR029058 -
Seca10g04183 2136 ProSiteProfiles Zinc finger CCHC-type profile. 2087 2102 IPR001878 GO:0003676|GO:0008270
Seca10g04183 2136 Gene3D alpha/beta hydrolase 31 165 IPR029058 -
Seca10g04183 2136 SMART c2hcfinal6 2086 2102 IPR001878 GO:0003676|GO:0008270
Seca10g04183 2136 SMART c2hcfinal6 2066 2082 IPR001878 GO:0003676|GO:0008270
Seca10g04183 2136 Pfam Reverse transcriptase (RNA-dependent DNA polymerase) 1138 1350 IPR000477 -
Seca10g04183 2136 Pfam Retrotransposon gag protein 1869 1968 IPR005162 -
Seca10g04183 2136 MobiDBLite consensus disorder prediction 545 579 - -
Seca10g04183 2136 MobiDBLite consensus disorder prediction 2109 2136 - -
Seca10g04183 2136 SUPERFAMILY DNase I-like 642 872 IPR036691 -
Seca10g04183 2136 MobiDBLite consensus disorder prediction 440 525 - -
Seca10g04183 2136 CDD RT_nLTR_like 1132 1372 - -
Seca10g04183 2136 Gene3D Endonuclease/exonuclease/phosphatase 640 873 IPR036691 -
Seca10g04183 2136 MobiDBLite consensus disorder prediction 541 588 - -
Seca10g04183 2136 ProSiteProfiles Zinc finger CCHC-type profile. 2067 2080 IPR001878 GO:0003676|GO:0008270
Seca10g04183 2136 MobiDBLite consensus disorder prediction 471 500 - -
Seca10g04183 2136 ProSiteProfiles Reverse transcriptase (RT) catalytic domain profile. 1119 1401 IPR000477 -
Seca10g04183 2136 Pfam Zinc knuckle 2066 2080 IPR001878 GO:0003676|GO:0008270
Seca10g04183 2136 SUPERFAMILY Retrovirus zinc finger-like domains 2060 2104 IPR036875 GO:0003676|GO:0008270
Seca10g04183 2136 Pfam alpha/beta hydrolase fold 112 165 IPR013094 GO:0016787
Seca10g04183 2136 MobiDBLite consensus disorder prediction 2009 2025 - -
Seca10g04183 2136 Gene3D - 2035 2111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g04183 Seca-Chr10 93903399 93919144 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g04183 85 286 Carbohydrate Esterase AT5G16080 33.735 1.45e-30 123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g04183 - - tpra:123890079 1114.37