Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g04174 ATGGGAAGAGGAAGGGTGGTTCTGGAAAGAATAGAGAACAAGATCAACAGGCAAGTAACCTTCTCAAAGAGAAGAAGTGGATTGCTGAAGAAAGCCTTTGAGCTTTGTGTGCTATGTGAGGCTGAAGTTGCCCTTATCATCTTTTCTAGCAGAGGCAAGGTTTTCCAATACAGCAGCACTGACATTAACAACATCATTGAAAGGTATCGCCAATGTCGTTACAAGTCCCAGGCTGGCGATTCACTTGAACATGAATCACAGAGCTTATACCAGGAGTTCTTGAAATTAAGATCGAAATATGAGTCTCTAGAACGGAGACAAAGGCATTTTCAAGGAGAAGAACTTGAGCCACTTGGTTTGAAAGAATTGCAGAACCTTGAGGAACAACTAGACAAAACTCTCGTGCTAGCTCGACAGCAGCAAACCAAAAAGCTCATGGCTCGAGCGGATGAATTACGTGAAAAGGTGCATAACTTAGAGGCGGTTAACAAACAATTGCAGTCCAAGGTATTCTCTTTAAATAATCATGCAACAGATGAATTCACAAACCTCGTCATTGAAAATAACAATCATATTCAGTTGCATGCTACACAAGCCAATGAATTTGAATCTGACAAAACCTTAAACACATGGTATATATGCTCTATTTTTTGGCATTTCATTTTGTTACTCTATATCAACCTACTCATCAGTAATCAATTACATAAAGGTGTGTATAAATTTTTTCTAATAAAAAAGAGTGAATTACTAAGAATTGGAATGGAAAAATGTTCTAATTAA 780 0.3769 MGRGRVVLERIENKINRQVTFSKRRSGLLKKAFELCVLCEAEVALIIFSSRGKVFQYSSTDINNIIERYRQCRYKSQAGDSLEHESQSLYQEFLKLRSKYESLERRQRHFQGEELEPLGLKELQNLEEQLDKTLVLARQQQTKKLMARADELREKVHNLEAVNKQLQSKVFSLNNHATDEFTNLVIENNNHIQLHATQANEFESDKTLNTWYICSIFWHFILLLYINLLISNQLHKGVYKFFLIKKSELLRIGMEKCSN. 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g04174 259 Coils Coil 120 169 - -
Seca10g04174 259 Gene3D - 13 111 IPR036879 GO:0003677|GO:0046983
Seca10g04174 259 SUPERFAMILY SRF-like 2 87 IPR036879 GO:0003677|GO:0046983
Seca10g04174 259 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Seca10g04174 259 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Seca10g04174 259 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Seca10g04174 259 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Seca10g04174 259 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Seca10g04174 259 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Seca10g04174 259 Pfam K-box region 83 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Seca10g04174 259 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 177 - -
Seca10g04174 259 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Seca10g04174 259 Coils Coil 86 106 - -
Seca10g04174 259 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Seca10g04174 259 FunFam MADS-box transcription factor MADS-MC 13 88 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g04174 Seca-Chr10 93487202 93496911 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g04174 1 184 MADS-box Gene Family AT2G45650 54.348 8.08e-59 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Seca10g04174 K-box 8.4e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g04174 K09264 - gmx:100793681 305.449