Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g04169 ATGGGTAAGGAGTGGAATTGGGCTGGTAGATCTTCCAAGAGAGGAGGAGGAGGAGCTGAAGCACAAACCCCTTCTGGTTGCATGTGTGCTGTCTTTCACATCTTTGATTTTCATCCATTTCACTTTCCCACCACTATTAACCATCACCAACAACAAACCTCTTGCATCCAAGAAGACCATACTACTATCCCCAAAGTACTTTTGTATAATTCAGGAGCTGAAGCACCCAGGAATAGCTTGGAATCAGAGGATGGTAGAGTTTCATCTGATTCAAAAGAAGAAAATTTTAAAATCCCAAAGAAAATACAAATTAAAACAAGTGGAAGCACAAGAACAAGTGCTGGCAATTTGAATGATTTGTCCTCAGAAATCAGCAATTCTCCAGGGATAAAGACACCAACTTTGGTTGCTAGATTAATGGGTCTAGATCTTCTCCCAGGTGAACACTCACCCTCTTCTTCTTCTTCATGTCTTTCCACTCCAAACCTTCCACAAGGCAATATTCCACCACATCTGCAACATTTGAGACACAAGCAACACATCCAAACCAAACCAAGAAACAGCACAGACAGTGACATTCATGTTGCAACCACTCATTCCTTGCCTGAGACTCCTAGAATATCCTCTGCTAGAAGATCAGATGTTGATCATCATAGACTCTCTCTCCAAATCAACAAGGAGAACATGATGAACCTTAGTGAGGAATTGGAGCTTCCTCGGTTTTCATTTTCAAAAAGGAAATGTAGTGATGAGAACAATGTTAGCAAAAGTCCAAGCCACTATGCAAGGCAAATTGTTAAACAAGTTAAGGAAAGTGTGAGTAGAAAAGTTGGACAAGACATCACCAACACTCTCAAAAGCAGAGAACAAGCAAGGGAAGAATTTGCAGGGCAATTAAGAATCAAGAAATCTTCCAAGACATCATTGAAAGCACTTGATGAATCAAGCCCAGGAAAGCATTCAAATTCATCATCCTATTCCCCAAGGCTCATGAGATTCATGGACAACAAAAACAAGCCAAGCACAACAACACCACAGAACACACACCAAATTGTGCTGAAACTACCACCACCTCCACCTCCAGTTAACACTCAACCACAGCTTCCAAGAGTTTTAACAAAGGCAAAGACTCAAGCATTGCCACAGCAGCAGCAGCAGCAGCAAGAGTCAAGGAACCAGAAATCAGTGCCAAAATGTAAGAAGGTAAACAATGAAAAGTTCAACTCAAGGCTCAAAAGACCTCCACAGACATCAGATATAATCAGAAATAAACAAGAAGAGGCATTCATCATTCGTCCAACTTCACCTACCAGAGTCAATGATATCAAAGCAACAAAAAGCAAGAAAACTCAACCATTGTCAAGCAATTTCCTTAATAACATCAACACTGTCCCCAATCTCATCCATGTCAAGACAGACCCTTCTCCTCCAGCAACCAAAATTCATCAAAAACAGTCACAGGTGTCTGATACCCAAGAGTCCAAACGCAGCTCACAGTTATCTAGTTGTTCGAGCCAGAGGTACAAACAAGAAGGAACAAGCACACTCGCCACCCGAGAAACAAGCACCAACAATGAGTACAAACCAAACGGTGCCTCCACCACCGGAGCTGAACTTCACAAACCAGAATTTCAGTACATCACAGAAATCCTAAGCCGTACCACTTCGTTAACCAAACAAGGTACTCCCACAACAACAACAACACTGGACCCATCAATCTTCCACCACCTTGAACTCGACCACGATGATAAAGATCGCACCTTTACCCCTCAAAACGAACTGGGTCACCGTTGGAATCGAAGGTTGCTGTTTGATTTGGTGGATGAAGTGTTGAAGGAGATTCTGAGGCCTAAAGGAAGGGAAAAAGGGTTTTGGTTTTTGAATGGGTTTTGCTACCAAGGGAGCGTTGAAGGGTTAACAGAGAGGGTTTGGAAGAGGGTTGGGGAATTCCCATGTGCGAAGTGTGAGGTGTTGGATGACATAGATGGGTTGATAGAAGGAGAGGACATGGAGAAAGTGAAGGTGGAAGAGGTGGAAGAAGAAGAAAGGTTGGTGGCAGAGATTGAAAGGAACATATGGGACACGTTGGTGCATGAAACGGTTATGGTTTTGGATTGTTGTGAAAGTGGGGCCCATTTAAGTGTGTGA 2148 0.4283 MGKEWNWAGRSSKRGGGGAEAQTPSGCMCAVFHIFDFHPFHFPTTINHHQQQTSCIQEDHTTIPKVLLYNSGAEAPRNSLESEDGRVSSDSKEENFKIPKKIQIKTSGSTRTSAGNLNDLSSEISNSPGIKTPTLVARLMGLDLLPGEHSPSSSSSCLSTPNLPQGNIPPHLQHLRHKQHIQTKPRNSTDSDIHVATTHSLPETPRISSARRSDVDHHRLSLQINKENMMNLSEELELPRFSFSKRKCSDENNVSKSPSHYARQIVKQVKESVSRKVGQDITNTLKSREQAREEFAGQLRIKKSSKTSLKALDESSPGKHSNSSSYSPRLMRFMDNKNKPSTTTPQNTHQIVLKLPPPPPPVNTQPQLPRVLTKAKTQALPQQQQQQQESRNQKSVPKCKKVNNEKFNSRLKRPPQTSDIIRNKQEEAFIIRPTSPTRVNDIKATKSKKTQPLSSNFLNNINTVPNLIHVKTDPSPPATKIHQKQSQVSDTQESKRSSQLSSCSSQRYKQEGTSTLATRETSTNNEYKPNGASTTGAELHKPEFQYITEILSRTTSLTKQGTPTTTTTLDPSIFHHLELDHDDKDRTFTPQNELGHRWNRRLLFDLVDEVLKEILRPKGREKGFWFLNGFCYQGSVEGLTERVWKRVGEFPCAKCEVLDDIDGLIEGEDMEKVKVEEVEEEERLVAEIERNIWDTLVHETVMVLDCCESGAHLSV. 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g04169 715 MobiDBLite consensus disorder prediction 146 192 - -
Seca10g04169 715 MobiDBLite consensus disorder prediction 1 22 - -
Seca10g04169 715 MobiDBLite consensus disorder prediction 367 393 - -
Seca10g04169 715 MobiDBLite consensus disorder prediction 286 300 - -
Seca10g04169 715 MobiDBLite consensus disorder prediction 74 127 - -
Seca10g04169 715 MobiDBLite consensus disorder prediction 467 539 - -
Seca10g04169 715 Pfam DUF761-associated sequence motif 121 150 IPR032795 -
Seca10g04169 715 MobiDBLite consensus disorder prediction 352 366 - -
Seca10g04169 715 MobiDBLite consensus disorder prediction 270 420 - -
Seca10g04169 715 MobiDBLite consensus disorder prediction 79 100 - -
Seca10g04169 715 MobiDBLite consensus disorder prediction 148 167 - -
Seca10g04169 715 MobiDBLite consensus disorder prediction 478 532 - -
Seca10g04169 715 Pfam Domain of unknown function (DUF4378) 543 699 IPR025486 -
Seca10g04169 715 Coils Coil 671 691 - -
Seca10g04169 715 PANTHER LOW PROTEIN: M-PHASE INDUCER PHOSPHATASE-LIKE PROTEIN 1 705 - -
Seca10g04169 715 MobiDBLite consensus disorder prediction 102 127 - -
Seca10g04169 715 MobiDBLite consensus disorder prediction 394 408 - -
Seca10g04169 715 MobiDBLite consensus disorder prediction 301 351 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g04169 Seca-Chr10 93200536 93204163 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g04169 102 700 TRM (TON1 Recruiting Motif) Superfamily AT5G62170 34.135 1.92e-57 204
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g04169 - - gmx:100791539 783.097
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g04169 10 93200536 93204163 Seca10g04169 10 93200536 93204163 ECH
Seca10g04169 10 93200536 93204163 Seca8g07455 8 171591988 171595003 PCT