Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g04160 ATGGTTATTGGTCATGAGTGTGCTGGGATCATAGAAGAAGTTGGTAGTCAAGTTAAGACTTTGGTGCCTGGTGACCGTGTGGCAATTGAGCCTGGGATCAGTTGTTGGCGTTGTGACCATTGCAAACTGGGTCGATATAATTTATGCCCTGATATGAAGTTTTTTGCTACTCCACCAGTTCATGGTTCCCTGGCTAATCAGGTAGTGCATCCAGCAGATCTATGTTTCAAACTGCCAGACAATGTGAGTTTGGAAGAAGGGGCAATGTGTGAACCCTTAAGTGTTGGTGTTCATGCTTGTAGACGAGCTAATATTGGACCAGAAACAAATGTTTTGATCATGGGAGCAGGACCTATAGGACTTGTTACAATGCTTGCAGCTCGCGCTTTTGGAGCTCCCAGGATAGTCATTGTGGATGTGGATGACTATCGTTTATCTGTTGCAAAATCTCTTGGTGCAGATGATATTGTCAAAGTTTCAACAAACATTCAGGATTTAGCTGAAGAAGTTAAGCAGATACACAAGGTTATGGGAGCTGGTGTAGATGTTACCTTTGATTGTGCTGGCTTTGACAAAACCATGTCTACAGCATTGACTGCTACTCAGCCAGGGGGCAAAGTCTGCCTAGTGGGAATGGGTCATTCTGAAATGACTGTCCCACTCACCCCTGCTGCTGCAAGGGAAGTTGATGTGATTGGCATTTTCCGCTATAAGAACACATGGCCTCTATGCCTTGAGTTTCTGAGGAGTGGCAAAATCGATGTGAAACCCCTTATAACTCACAGGTTTGGGTTCTCTCAGAAGGAAGTGGAAGAAGCCTTTGAAACAAGTGCTCGTGGTGGTAATGCCATTAAGGTCATGTTCAATCTCTAG 873 0.4467 MVIGHECAGIIEEVGSQVKTLVPGDRVAIEPGISCWRCDHCKLGRYNLCPDMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGAGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKSLGADDIVKVSTNIQDLAEEVKQIHKVMGAGVDVTFDCAGFDKTMSTALTATQPGGKVCLVGMGHSEMTVPLTPAAAREVDVIGIFRYKNTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARGGNAIKVMFNL. 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g04160 290 CDD sorbitol_DH 1 289 IPR045306 GO:0016616
Seca10g04160 290 Gene3D - 95 235 - -
Seca10g04160 290 FunFam Sorbitol dehydrogenase 95 235 - -
Seca10g04160 290 Pfam Zinc-binding dehydrogenase 118 248 IPR013149 -
Seca10g04160 290 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 4 18 IPR002328 GO:0008270|GO:0016491
Seca10g04160 290 Gene3D - 1 276 - -
Seca10g04160 290 SUPERFAMILY GroES-like 1 117 IPR011032 -
Seca10g04160 290 Pfam Alcohol dehydrogenase GroES-like domain 1 78 IPR013154 -
Seca10g04160 290 PANTHER SORBITOL DEHYDROGENASE 1 290 - -
Seca10g04160 290 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 81 254 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g04160 Seca-Chr10 92732607 92738857 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g04160 1 223 Monolignol Biosynthesis Gene Families AT4G37980 27.586 1.76e-14 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g04160 K00008 - gmx:100791559 563.533
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g04160 10 92732607 92738857 Seca10g04160 10 92732607 92738857 ECH