Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g04158 ATGGACGTAGACGGTGGCAACAAGCGCGTGTACCACCGGCTCGGTGGGCCCGCGGGGGATGCAAAGAACCAGAAAGTGTGCTTTCATTGGCAAGCGGGCAAGTGCAATCGTTACCCTTGCCCGTTTTTGCATAGTGAGTTGCCTCCTTCCAACGCCAATGGCACCTCCTCGAAGAGGCCTCACGATAATTCGGGGTTCTCGGGCCCCCGCCGGGGCTCGAATTTCAACACATGGGGTCGCGGTGGTGGTCGTGGTGGAGGAGGTGGCAGAGGAGTAGTTATGAAGGCTGATAAAGTTTGCAATTATTGGATTCAGGGGAATTGTAGTTATGGAGAGAGGTGTAAGTTCCTTCACTCTTGGAGTTTAGGTGATGGCTTTACATTATTGACCCAGCTTGAAGGTCATCAGAAGGTAGTTGTGAGTGGGATTGCCCTGCCCTCTGGTTCAGATAAGCTTTATACTGGAAGTACTGATCAGACTGTAAGGGTTTGGGACTGCCAGTCTGGAAAGTGTATAGCTGTGATCAATCTTGGTGGTGAAGTAGGTTGTATGATCAGCGAAGGTCCCTGGGTTTTCGTTGGCATACTCAATTTTGTTAAGGTCTGGAACACACAAAATTCTATGGAGCTAAGTCTGGATGGTCCTGTTGGACAAGTTTATGCACTGGTCGTAAATAATGATATGCTCTTTGCTGGTACGCAGGATGGATCCATATTGGTATGGAAGTTTAATGTAGTTACTAACTGCTTCGAGCCAGCTGCATCTCTTAAAGGTCATTCCCGTGGTGTTGTTTCGTTAGTTGTTGGAGCTAATAGACTTTACTCTGGTTCAATGGACAATACAATAAAAGTATGGAACCTTGAAACCTTACAGTGTTTACAGACACTAACAGAGCACACATCTGTTGTGATGTCTGTTCTTTGCTGGGATCAGTTCCTTTTATCATGTTCATTGGACAAAACAGTGAAGGTATGGTATGCTACGGAAAGTGGAAACTTGGAAGTGACCTATACTCACAATGAAGAACATGGTATAGTTAACCTCTGTGGGATGCACGATTCACAAGGCAAGCCCATTTTGCTATGCTCTTGCAATGATAACACTGTGCGCCTCTATGATCTGCCATCATTTACAGAGAGGGGTAAGATATTCACAAAACAAGAGGTACGAGCAATTCAGGTAGGGCCCGGTGGCATGTTCTTCACCGGTGATGGAACTGGTCAAGTGAGAGTGTGGAATTGGAAAACGGAGCCAACTCCTTTCGTCCAATAA 1272 0.4654 MDVDGGNKRVYHRLGGPAGDAKNQKVCFHWQAGKCNRYPCPFLHSELPPSNANGTSSKRPHDNSGFSGPRRGSNFNTWGRGGGRGGGGGRGVVMKADKVCNYWIQGNCSYGERCKFLHSWSLGDGFTLLTQLEGHQKVVVSGIALPSGSDKLYTGSTDQTVRVWDCQSGKCIAVINLGGEVGCMISEGPWVFVGILNFVKVWNTQNSMELSLDGPVGQVYALVVNNDMLFAGTQDGSILVWKFNVVTNCFEPAASLKGHSRGVVSLVVGANRLYSGSMDNTIKVWNLETLQCLQTLTEHTSVVMSVLCWDQFLLSCSLDKTVKVWYATESGNLEVTYTHNEEHGIVNLCGMHDSQGKPILLCSCNDNTVRLYDLPSFTERGKIFTKQEVRAIQVGPGGMFFTGDGTGQVRVWNWKTEPTPFVQ. 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g04158 423 Gene3D - 211 421 IPR015943 GO:0005515
Seca10g04158 423 MobiDBLite consensus disorder prediction 50 74 - -
Seca10g04158 423 Pfam WD domain, G-beta repeat 128 165 IPR001680 GO:0005515
Seca10g04158 423 Pfam WD domain, G-beta repeat 291 325 IPR001680 GO:0005515
Seca10g04158 423 Pfam WD domain, G-beta repeat 252 286 IPR001680 GO:0005515
Seca10g04158 423 Gene3D - 111 209 IPR015943 GO:0005515
Seca10g04158 423 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 256 289 - -
Seca10g04158 423 SMART WD40_4 125 165 IPR001680 GO:0005515
Seca10g04158 423 SMART WD40_4 289 326 IPR001680 GO:0005515
Seca10g04158 423 SMART WD40_4 249 286 IPR001680 GO:0005515
Seca10g04158 423 SMART WD40_4 376 413 IPR001680 GO:0005515
Seca10g04158 423 SMART WD40_4 205 242 IPR001680 GO:0005515
Seca10g04158 423 SMART WD40_4 330 373 IPR001680 GO:0005515
Seca10g04158 423 SMART c3hfinal6 96 120 IPR000571 GO:0046872
Seca10g04158 423 SMART c3hfinal6 22 46 IPR000571 GO:0046872
Seca10g04158 423 FunFam Zinc finger CCCH domain-containing protein 48 213 421 - -
Seca10g04158 423 SUPERFAMILY WD40 repeat-like 126 417 IPR036322 GO:0005515
Seca10g04158 423 PRINTS G protein beta WD-40 repeat signature 152 166 IPR020472 -
Seca10g04158 423 PRINTS G protein beta WD-40 repeat signature 313 327 IPR020472 -
Seca10g04158 423 PRINTS G protein beta WD-40 repeat signature 273 287 IPR020472 -
Seca10g04158 423 ProSiteProfiles Trp-Asp (WD) repeats profile. 132 174 IPR001680 GO:0005515
Seca10g04158 423 Pfam Zinc finger domain 100 118 - -
Seca10g04158 423 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 132 165 - -
Seca10g04158 423 ProSitePatterns Trp-Asp (WD) repeats signature. 273 287 IPR019775 -
Seca10g04158 423 MobiDBLite consensus disorder prediction 50 88 - -
Seca10g04158 423 ProSiteProfiles Zinc finger C3H1-type profile. 21 47 IPR000571 GO:0046872
Seca10g04158 423 ProSiteProfiles Zinc finger C3H1-type profile. 94 121 IPR000571 GO:0046872
Seca10g04158 423 SUPERFAMILY CCCH zinc finger 96 119 IPR036855 GO:0046872
Seca10g04158 423 ProSiteProfiles Trp-Asp (WD) repeats profile. 256 295 IPR001680 GO:0005515
Seca10g04158 423 PANTHER - 97 418 IPR044715 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g04158 Seca-Chr10 92711131 92720433 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g04158 149 297 Eukaryotic Initiation Factors Gene Family AT2G46290 26.590 2.27e-08 53.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Seca10g04158 WD40 0.00015 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g04158 - - gmx:100792089 744.577
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g04158 10 92711131 92720433 Seca10g04158 10 92711131 92720433 ECH