Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g04157 ATGGCTGTTGTCAAGAGCAACAGCTGCACTGAACCTTGTACTTCATACAATTGTTACAAAGTGCCAGGCTTGACCGAAACCATATTAGATACAAATCATACCTCTAATTTGAAAGATAGGTATGAACTTGGGGAGCAGTTGGGTTGGGGTCAATTTGGTGTCATAAGAGCATGCTCGGATAGGTTGACAGGAGAGGTTTTGGCCTGCAAATCAATTGCTAAAGATAGGTTGGTTACTGTGGATGATCTGAGGAGTGTAAAACTTGAGATTGAGATAATGGCTAAGCTATCTGGGCACCCAAATGTTGTTGATCTCAAGGCAGTTTATGAAGAGGAAGGTTTTGTTCATTTGGTGATGGAGCTTTGTGCGGGAGGGGAGTTGTTTCACCGATTAGAGAAGCATGGACGGTTTTCTGAATCTGAAGCCAGGGTTCTCTTTAAGCATTTAATGCAGGTGGTCTTGTATTGTCATGAAAATGGGATTGTTCATAGGGATTTGAAGCCTGAGAACATTCTCTTAGCAACAAGAGCCTCCTCATCTCCAATTAAATTGGCAGATTTTGGGCTTGCCACCTACATAAAGCCTGGACAGAGTTTGCACGGGTTAGTTGGGAGTCCATTCTATATAGCTCCAGAGGTACTAGCTGGTGGATATAACCAGGCAGCTGATGTGTGGAGTGCAGGGGTTATACTTTACATTCTATTGAGTGGGATGCCTCCATTTTGGGGGAAGACCAAATCGCAGATATTTGAAGCTGTTAAGGCAGCTGCCCTAAGATTCCCATCAGAACCTTGGGATCGCATTTCTGAATCAGCTAAAGATTTGATCAGGGGAATGCTGTGTACAGAACCTTCTCAAAGGCTCACAGCCAAGGAGGTTTTAGATCATTGCTGGATGGAAAGCAATCAAACAAATCCTGAACAACTAAGTGAACATAGTATCCGAAGTTGTGAAGACTGGGATGTTGGTGGCGGCTCATTTTCTACCCCTTTTATTTCCAGGAATCAGGACATCAGCTTCGGTGCCGGATCACCTACTTGTGATGCTCAATCACCCACATTCACATGCAGATCATCATTTTCTTCTTTTCTGGTGGAACCAGTTACTCCTTGTTTAGTTTCTGGTGGATTTTCATTTCAGAGCACAGACGATTCCCCTGGTCTGGAATTTGCTTCACCTATTCCCTCAATGCTTAGCTTTTCATTTCTCAGCCCGAGTTCTGTTGTTGAGCAAAAGAGTTGTAAATTAGAGTGCTCAGCTAACTTTTCGGTTGTAAATGCAATTGCTGGAGAAGCAAGCTTGGGGAAGTTGCTTTTACCACCAGATTCTGTTGAACATGATATTAAAGAAACAGGCCGCAAGCCTTCAGAGACTAAAAGGGCAGGTGGAATGAATGGACATAGGGTATTGGGAATCCACAATAAGAGAAACAGGACAATTGGACTTGGTGAGTGTGTACAACTTGACCTTGTGGTGACTGAATCAGTCATCCGTTGGTCATCATGCACTCAACTCCCTACATCTTTGAGATCATCTCTTGTCTGCTAG 1548 0.436 MAVVKSNSCTEPCTSYNCYKVPGLTETILDTNHTSNLKDRYELGEQLGWGQFGVIRACSDRLTGEVLACKSIAKDRLVTVDDLRSVKLEIEIMAKLSGHPNVVDLKAVYEEEGFVHLVMELCAGGELFHRLEKHGRFSESEARVLFKHLMQVVLYCHENGIVHRDLKPENILLATRASSSPIKLADFGLATYIKPGQSLHGLVGSPFYIAPEVLAGGYNQAADVWSAGVILYILLSGMPPFWGKTKSQIFEAVKAAALRFPSEPWDRISESAKDLIRGMLCTEPSQRLTAKEVLDHCWMESNQTNPEQLSEHSIRSCEDWDVGGGSFSTPFISRNQDISFGAGSPTCDAQSPTFTCRSSFSSFLVEPVTPCLVSGGFSFQSTDDSPGLEFASPIPSMLSFSFLSPSSVVEQKSCKLECSANFSVVNAIAGEASLGKLLLPPDSVEHDIKETGRKPSETKRAGGMNGHRVLGIHNKRNRTIGLGECVQLDLVVTESVIRWSSCTQLPTSLRSSLVC. 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g04157 515 ProSiteProfiles Protein kinase domain profile. 41 299 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g04157 515 ProSitePatterns Serine/Threonine protein kinases active-site signature. 161 173 IPR008271 GO:0004672|GO:0006468
Seca10g04157 515 Gene3D Phosphorylase Kinase; domain 1 43 127 - -
Seca10g04157 515 Pfam Protein kinase domain 41 299 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g04157 515 PANTHER SERINE/THREONINE-PROTEIN KINASE 28 312 - -
Seca10g04157 515 CDD STKc_CAMK 40 298 - -
Seca10g04157 515 MobiDBLite consensus disorder prediction 446 461 - -
Seca10g04157 515 MobiDBLite consensus disorder prediction 446 468 - -
Seca10g04157 515 ProSitePatterns Protein kinases ATP-binding region signature. 47 74 IPR017441 GO:0005524
Seca10g04157 515 Gene3D Transferase(Phosphotransferase) domain 1 128 320 - -
Seca10g04157 515 FunFam Phosphoenolpyruvate carboxylase kinase 128 315 - -
Seca10g04157 515 FunFam Calcium-dependent protein kinase 1 43 126 - -
Seca10g04157 515 SUPERFAMILY Protein kinase-like (PK-like) 38 363 IPR011009 -
Seca10g04157 515 SMART serkin_6 41 299 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g04157 Seca-Chr10 92660664 92664840 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g04157 24 306 EF-hand Containing Proteins AT3G57530 48.057 4.64e-97 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Seca10g04157 Pkinase 8.9e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g04157 - - gmx:100776088 884.789