Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g04143 ATGGTTTCCTATAACATTCTCTACCTCTTGATCCTTGTTATTAGCTTTCTCAGTTTTGCAACTACTGAGGCACAGGACGTCCCTTTTTTACTAGATAAATATTGCTCCAATGACAGAACCAACAGCGCCTTCCAATTGGATGTTAGGATTAGGATCCTCCTTTCTTCCTTATCTTCCAAGGCCACCGGTGGCACCCAATTTTACAACGTCACAGTCACCGGCTCTGCAGAGTCAGTCTATGGCATGTTCATGTGTAGGGGTGACGTCCCCTCTCAGCTCTGTCAACAATGTGTCAGTAGTGCAACCCAGCTACTCTCCTCAGAGTGCTCCTTGTCAAAAGAAGCTGTGATCTGGTACGACGAGTGTATGGTTCGGTACTCCAATTCCTCTTTCTTCTCCATTATGGACGCAGGGTATGTAAGTGGCACGATTAACGTCGCCTATATACCAGACTCAATCCTGCAAAAGTTCATGCGTTTATGGTTTTTGACCTTGAATGAAACTGCGGATGAAGCAGCCCATACTCCTATTGGTGACAAGAAGTTTGCCACAAGGAAATTATCCCTACCTGAATTTCATACCCTATACTGTCTAGTTCAGTGCACACCAGACTTGTCTCCCCATGATTGCAGAGCTTGTCTAAGTGAAGGGATAAGCTACCTTTACCTTAATTCACATGGTGAGGGCAGAATGAGAACAAATATTGCAGTATATCCCAGCTGTAATGTTAGGTACGAAATGTACCCTTTCTATCTCTCCAATTTTTCGTCACCAAAGGCAGTACTCGTTCCTGAAACTAATGCTTCCCATGCTGATTCAAAATTTTCAGAAGATCCTGTTTATCTTTCCCACAATTGCTCAACTGACAATAATACCTTCACTGCAAACAGCTCTTTCCAAATACACCTAACCACCCTCTTCTCGTACTTGTCTTCCAACGCCAGCAACGGTATTAAATTTCACAAGGTTGATGTGGCGGGCGCAGTATTTGGCTTCTTCATGTGCCGAGGTGACCTTCCATCGCGCCTCTGCAAACAATGTGTCCTAAACGCAACGCAACGATTATCCTCGGTGTGTCGTTGGATTCAAGAGGCTACAATTTTCTACAGCCACTGCTTGCTTTGGTATTCCTATTCCTTTAACGATTTCTACTTCAATGTGCACCAAAGTCCTGTATTTTCTGAGCTGAACATAACCAACACTTCCAGCCGTAACCAGCAGAAGCAAAGCTTGTTTACTTTTGCATTGTCCAATACGTTGGATAAACTGCGATATGAGGTAGGGGAAAGTGAGCAGAAATATGGAACAAAATCGATAAAATTGAATGACTGGCAAACCCTTTATACTCTTGCTCAATGTACTCAAGATTTGTCTAGTGATGATTGTTGGAGATGTCTGGCAGATGTGATCGGAACAGAAATTCCATGGTCTCGTTTGGGAAGCGTTGGGGGAAGAGTTCTGTATCCTAGCTGCAATCTAAGGTTTGAATTCTTCCAATTTTACAGGGATGCTGACAAACCTCACCCGCTCGGTCCAAGTCCAATTACCCCTTCTCTATCTGCACTTGAAGAAAAAGGAAAAAGTCGGTTGCAAAAAAAATTATGGATTATTGTACCTGTAATTATCTCAGTGATATTATTCTCTTTAGGCTACTATTTGCTAAAGCGAAATGCAAGAAAGAGTTGCAATACTATTCTTATAGAAAATTTTGGTCATGAAAGTGCCACTTTAGAGCCATTGCAATTTGATTTAGCTATAATCGAAGTAGCAACTAACAACTTTTCAAACGAGAATAAGATTGGAAAAGGTGGATTTGGAGAAGTATATAAGGGCATTCTATTTGATGGACGACAAGTAGCCGTAAAGAGACTATCAAGAAGTTCTAGGCAAGATTTCCAACGAAAAAGGTCATTAAGTTGGGTTGAACGTTACAACATTATAGGAGGGATTGCTCGAGGAATTGTTTATTTACATGAACATTCTCGACTCAAAGTTATACATCGTGATCTCAAACCTAGTAATGTTCTATTAGATGAAAATATGATTCCAAAAATTTCAGACTTTGGTTTGGCAAGAATTGTTGAAATAAATCAAGACCAAGGAAGTACGAATAAAATTGTTGGAACATATGGTTATATGTCTCCAGAATATGCAATGTTTGGGCAATTTTCTGAGAAATCGGATGTTTTTAGTTTTGGAGTCATGGTTTTAGAGATTATCACTGGGAAAAAGAATCTAAGTTCATATGAACCACATCGTGTTGCAAATGGCCTCTTGAGTTATGCTTGGAGGCAGTGGAGGGATCAAACACCTTTCAATATATTGGACCCAAATATAGAAGAAAATCATTCCAAAACTGAAGTCATTAAATGCATTCAAATTGGTTTATTATGTGTTCAACAGAACCCTGATGCTAGACCTACAATGGTGATGGTTGTTTCATATTTGAGCAGTTATTTCATTGAATTGCCAATTCCACAAGAACCTGCGTTTTTCTTGCCTGGTAGAATGGATCCAAGAGCATTTGCACATGAATCAAGTTCTACCCAATCTATCAATAGTTCCACATTATTCTCTGTCAATGAAATTACTACGAGTACTTTTGTTCCTCGTTAG 2616 0.4014 MVSYNILYLLILVISFLSFATTEAQDVPFLLDKYCSNDRTNSAFQLDVRIRILLSSLSSKATGGTQFYNVTVTGSAESVYGMFMCRGDVPSQLCQQCVSSATQLLSSECSLSKEAVIWYDECMVRYSNSSFFSIMDAGYVSGTINVAYIPDSILQKFMRLWFLTLNETADEAAHTPIGDKKFATRKLSLPEFHTLYCLVQCTPDLSPHDCRACLSEGISYLYLNSHGEGRMRTNIAVYPSCNVRYEMYPFYLSNFSSPKAVLVPETNASHADSKFSEDPVYLSHNCSTDNNTFTANSSFQIHLTTLFSYLSSNASNGIKFHKVDVAGAVFGFFMCRGDLPSRLCKQCVLNATQRLSSVCRWIQEATIFYSHCLLWYSYSFNDFYFNVHQSPVFSELNITNTSSRNQQKQSLFTFALSNTLDKLRYEVGESEQKYGTKSIKLNDWQTLYTLAQCTQDLSSDDCWRCLADVIGTEIPWSRLGSVGGRVLYPSCNLRFEFFQFYRDADKPHPLGPSPITPSLSALEEKGKSRLQKKLWIIVPVIISVILFSLGYYLLKRNARKSCNTILIENFGHESATLEPLQFDLAIIEVATNNFSNENKIGKGGFGEVYKGILFDGRQVAVKRLSRSSRQDFQRKRSLSWVERYNIIGGIARGIVYLHEHSRLKVIHRDLKPSNVLLDENMIPKISDFGLARIVEINQDQGSTNKIVGTYGYMSPEYAMFGQFSEKSDVFSFGVMVLEIITGKKNLSSYEPHRVANGLLSYAWRQWRDQTPFNILDPNIEENHSKTEVIKCIQIGLLCVQQNPDARPTMVMVVSYLSSYFIELPIPQEPAFFLPGRMDPRAFAHESSSTQSINSSTLFSVNEITTSTFVPR. 872
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g04143 871 ProSiteProfiles Gnk2-homologous domain profile. 28 131 IPR002902 -
Seca10g04143 871 Pfam Salt stress response/antifungal 175 247 IPR002902 -
Seca10g04143 871 Pfam Salt stress response/antifungal 402 496 IPR002902 -
Seca10g04143 871 Pfam Salt stress response/antifungal 37 128 IPR002902 -
Seca10g04143 871 Pfam Salt stress response/antifungal 286 377 IPR002902 -
Seca10g04143 871 ProSiteProfiles Protein kinase domain profile. 541 820 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g04143 871 ProSiteProfiles Gnk2-homologous domain profile. 394 500 IPR002902 -
Seca10g04143 871 Pfam Protein kinase domain 634 813 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g04143 871 ProSitePatterns Serine/Threonine protein kinases active-site signature. 665 677 IPR008271 GO:0004672|GO:0006468
Seca10g04143 871 SMART serkin_6 594 820 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g04143 871 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 634 856 - -
Seca10g04143 871 Gene3D Transferase(Phosphotransferase) domain 1 632 820 - -
Seca10g04143 871 Gene3D Transferase(Phosphotransferase) domain 1 582 631 - -
Seca10g04143 871 SUPERFAMILY Protein kinase-like (PK-like) 577 854 IPR011009 -
Seca10g04143 871 Gene3D - 279 380 IPR038408 -
Seca10g04143 871 Gene3D - 394 500 IPR038408 -
Seca10g04143 871 Gene3D - 143 250 IPR038408 -
Seca10g04143 871 Gene3D - 29 131 IPR038408 -
Seca10g04143 871 ProSitePatterns Protein kinases ATP-binding region signature. 600 622 IPR017441 GO:0005524
Seca10g04143 871 FunFam Cysteine-rich receptor-like protein kinase 25 391 500 - -
Seca10g04143 871 ProSiteProfiles Gnk2-homologous domain profile. 281 381 IPR002902 -
Seca10g04143 871 ProSiteProfiles Gnk2-homologous domain profile. 136 250 IPR002902 -
Seca10g04143 871 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 279 380 - -
Seca10g04143 871 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 28 130 - -
Seca10g04143 871 FunFam cysteine-rich receptor-like protein kinase 10 626 823 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g04143 Seca-Chr10 92220597 92225577 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g04143 276 871 Receptor kinase-like Gene Family AT4G23140 37.982 5.58e-132 409
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca10g04143 Pkinase 2e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g04143 - - gmx:100798426 1051.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g04143 10 92220597 92225577 Seca10g04143 10 92220597 92225577 ECH
Seca10g03890 10 81569538 81571538 Seca10g04143 10 92220597 92225577 PCT