Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g04131 ATGTTTGAGTTTCACCTCAAACACTACCTCTTCACTTCCTTCACATGGCTCCATCTCCTTCTTCTATTCCTTTACCATGTTGATGCACAAGCATCCATGGAGCCAGTTCCCACAGACATCTCACACCACAATTGGGAACCTTCTTTTGCAATCACAGTAGGAGCCATCATTTGTGTCCTTCTCTTCATGGGAATCATCTCAATCTACATCAGAAAATGTGCTGAGTCACGCATCATCATCACCAGAACCAACCCAATTGGTGCTACTAACACAAATTGCCCATGTTCTTGTTCACAAGGCATCAACAAAGAACTCCTCAGCACCTTCCCAATTATCTTTTACTCCACAATCAAGGACCTTAAAACAGGTAAAGGACCTTTAGAATGTGCAGTGTGTTTGACAGATTTCAAAGACCAAGACACCCTTAGGTTACTACCTAAATGCAACCATGTGTTTCACCCTCAATGCATTGATTCATGGCTAGCTTCTCATGTTACATGCCCAGTTTGTCGTGCAAATCTGAACCAAGATTCATGCCAAGTTGCCATAACCATCCCAACCCATTTGACCAATGATGAGGAAGGTTCTGAAACCAGAGGTGAAAGTGAAGAGAATGAGATAGAGCCTAACCCAAACCTAAACCAAAACCAGAACCAGAACCTGAACCTGGACCTGGACCTGGACCCAGTTGTTCATAAAGGTGATCAGGGTAATTGTGATGATGGGGGTGTGTCAAAATCGAATCTTTTGAGGTCAAATTCAACGGGTCATTCGATGGTTGAACCAGTGAAGTGTGTGGAGAGGTACACGCTGAGGTTACCAGAGGATGTGAGAACGTACATTCTTGTGAACCATGAAAGAAGCTGTTCCAACAACAACATAGTGAAGGGGTTATGTTGGAGTGACAATGAAGGGAGCAGCATAGAGAAGGGGATCAATGAAGAAGAAAAAGTGGAACGGTGGGTGCTGTGTGCACCACCATTTGTTACGCGTCATGGTTGA 1002 0.4411 MFEFHLKHYLFTSFTWLHLLLLFLYHVDAQASMEPVPTDISHHNWEPSFAITVGAIICVLLFMGIISIYIRKCAESRIIITRTNPIGATNTNCPCSCSQGINKELLSTFPIIFYSTIKDLKTGKGPLECAVCLTDFKDQDTLRLLPKCNHVFHPQCIDSWLASHVTCPVCRANLNQDSCQVAITIPTHLTNDEEGSETRGESEENEIEPNPNLNQNQNQNLNLDLDLDPVVHKGDQGNCDDGGVSKSNLLRSNSTGHSMVEPVKCVERYTLRLPEDVRTYILVNHERSCSNNNIVKGLCWSDNEGSSIEKGINEEEKVERWVLCAPPFVTRHG. 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g04131 333 CDD RING-H2_EL5-like 128 171 - -
Seca10g04131 333 PANTHER RING FINGER DOMAIN-CONTAINING 41 179 - -
Seca10g04131 333 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 112 178 IPR013083 -
Seca10g04131 333 MobiDBLite consensus disorder prediction 192 206 - -
Seca10g04131 333 SUPERFAMILY RING/U-box 128 177 - -
Seca10g04131 333 Pfam Ring finger domain 128 171 IPR001841 -
Seca10g04131 333 FunFam E3 ubiquitin-protein ligase ATL6 90 177 - -
Seca10g04131 333 ProSiteProfiles Zinc finger RING-type profile. 129 171 IPR001841 -
Seca10g04131 333 SMART ring_2 129 170 IPR001841 -
Seca10g04131 333 MobiDBLite consensus disorder prediction 190 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g04131 Seca-Chr10 91795032 91796033 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g04131 19 327 Rapid Response to Elicitors AT3G05200 35.463 2.96e-57 188
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g04131 K10664 - gmx:100782532 339.347