Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g04130 ATGGCACTCTTATTCCTCTTAGCAACGTTTTCTTCGTTGTTCCATGCCACGTATGCTCAATCAGGTGCACAACCACCGGTACCTTCACGCGCTTCCAACGAAGGTGCAAACACGACGCTTCCGATGTTGCTCGTGCTTTTCGTTTTCGCGTCCTTCATCACGTGCTTCTGTTCCTTCTACGTTCGCTACTGTTCCGAACGGTACGTGGTTACGGCAACCACCGTTACAACTAACGGCGTCGACCCGGAAGTTCTTGCCACGTGTCCTATCGTGGTTTACTCCGCCGTTAAAAAGGGTCACCACCACGTGGCAATGCAATGCGCTGTGTGCTTGGGTGAGTTCGGGGATCTCGACGCGCTTCGGTTGTTGCCGAAGTGCAGTCACGTGTTCCACACGCGTTGTATTGACACGTGGCTGTCTTCGCACGTGACCTGCCCCATTTGTCGCGGCGAAATAGTCGCGGAAATTGGGTGTGAAAACGGTGCGTGCCAAGTGTTTGGTGAAAGTTCTGTGGGTGCTTTTGGGGTTTTGGTGAGGTCCCACTCGACGGGTCATTCGTTGGTTGAACCGGAGAAGAGTGAGGATGTGGAGGTGAAAATGCAGATTGTGGAGGATAAAGGTGGGAATTTGATGATTGGGATGAAGCGTTCGGCGAGCTACGACGTCGTTTTGAGGATTGAAGAAGTGGGGTCGGGTAAGGATGAAGAAAGGGGTGAAGGTAGCAGCAGAAAGGGTCGGTTTGGATGGGGTTGTTCGAGTGTGACATCACCGAATGCGTCCACCACGTGTCCTGGGATTTCAAGGTTTTGGGCTTCTTCTGTTGTGAGAGAAGACATAGAGTTTAAAGAGAAAACGATTTTTCAAATCGTGTGA 873 0.5143 MALLFLLATFSSLFHATYAQSGAQPPVPSRASNEGANTTLPMLLVLFVFASFITCFCSFYVRYCSERYVVTATTVTTNGVDPEVLATCPIVVYSAVKKGHHHVAMQCAVCLGEFGDLDALRLLPKCSHVFHTRCIDTWLSSHVTCPICRGEIVAEIGCENGACQVFGESSVGAFGVLVRSHSTGHSLVEPEKSEDVEVKMQIVEDKGGNLMIGMKRSASYDVVLRIEEVGSGKDEERGEGSSRKGRFGWGCSSVTSPNASTTCPGISRFWASSVVREDIEFKEKTIFQIV. 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g04130 290 ProSiteProfiles Zinc finger RING-type profile. 107 149 IPR001841 -
Seca10g04130 290 CDD RING-H2_EL5-like 106 149 - -
Seca10g04130 290 Pfam Ring finger domain 106 149 IPR001841 -
Seca10g04130 290 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 32 169 - -
Seca10g04130 290 FunFam E3 ubiquitin-protein ligase ATL6 69 155 - -
Seca10g04130 290 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 66 154 IPR013083 -
Seca10g04130 290 SMART ring_2 107 148 IPR001841 -
Seca10g04130 290 SUPERFAMILY RING/U-box 99 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g04130 Seca-Chr10 91722487 91723443 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g04130 1 247 Rapid Response to Elicitors AT3G05200 31.046 1.30e-27 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g04130 K10664 - gmx:102665105 236.113