Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g04114 ATGGGTGATAATGTTGATGGTATCAGTAACGGTAGTGGTGGATTGGAAAATATAGAGGAGGTAACTGAAGATGTTGTTGAGGTTCATAACATCCTTGAGGGGATGGGCTTTGATAGTGAAAAAGACTTTCCGATTATTGACCCCATGTTGCTTAGTAGCAATCTTGTGAGCACTTTTCATTTCTCTGACTTAGAGGGAAGAAAGAGGAAGAAAAAAAATGATGATGAGGAGGAGGAGGAGGAAGTAGTGCGTGAACCTAGACCTGAGACAAGAACAGAATGTAAAGCAATGATGAAGGTCCGTGTTGATTGTGTTAGTGGGAGGTGGCATGTTTGTAAGTTCATTGAAGAGCACAACCACAGACTATTGAAAAAAATACATACATCAATGTTGCCTGCCCATAGGAAAATGACTGATGCGGATATAATGCAACTGAACAATTTGGGTAAGGTTGGTATAAGGACACCCCACATATATGGATATTTTGCAAGCCAGTCAGGTGGGTTTCAGTATGTTGGATTTTCTAAAAGAGACATGTATAACCAGATTGGTAGGCAAAGGATGATGCAGGCTACGAATGTAAAGGGTGCATTTCAATACCTACGTGATATTGGTAATTGTAGTGGACCTATGTTTTGGAGCCACACTATTGATAATGAAGGTAGGCTTGATCATTTATTTTGGTGTGATGGACATAGTCAGATTGACTACAAAGTGTTTGGTGATGTGTTAGCATTTGATGCTACTTACAAAAGGAATAAATATCATTTCCCCTTGGTGGTGTTTTTTGGTATTAACCATCACAACCAGACTACTGTTTTTGCCAGTGGTGTTATTGCAAATGAAACTGAAGATACATATGTGTGGTTACTTGAACAGTTGATGGTTGCAATGAAAGGGAAGGCGCCTCTATCAGTAATTACAGACGGAGATTTGGCAATGAGGAATGCTATCAAGAGAGTATTTCCAAATTCACATCATAGGTTATGCGCATGGCATCTGTTACAGAATGCTAATTGTAATGTGAAGAATGCAAAATTCCTTGCGGGGTTAAAGAGGTGCATGCTTGGTGATTATGAGATTTATGAGTTCCAGAGAAAGTGGTCTCAAATTGTTACAGAGTGTGGACTTGAGGAAAATACTTGGGTCAAAGAAATGTATGAGAAAAGGCGCATGTGGGCATCTTGCTATATTAGGGGTCAATTCTTTGCAGGAATAAGGACTACATCACGGTGTGAGGGGCTCCATGCTCAGCTTGGGAGGTTTGTCCATTCACGTAATGCTTTAGTTGATTTTTTACAAAATTATCATCATTGCCTTGAATATTTTCGTTACAAAGAAATAGAGGCGGATTATAGGACTTTATTAGGAGAACCTGTATTGCAAACTAATTTGCATGCATTAGAGAGGTCTGCATCTAGAATGTTTACTAAGGAGATTTTTAAGTTATTCCGTCCTGCATTGTCAAGGGGTAGTACTGTAATGGTTAAGAGTTGTAGAGAATTAATGTCCCAAACAATTTACACTGTGTCAAAATATGGAAGACCAAACAAGGAGTGGTGTGTGTCATATTTGGCTCAACCATTGCTAATTAGATGTTCTTGTAAAAGGATGGAGTCTTTTGGCCTTCCATGTGAACATATTGTAGGTGTGTTGGTTCATCTAAACATTAATGAGATTCCTAGTTGTATTGTTCTTGATAGATGGACAATGGTTATGAAAGAAAAATTGTATGAGTTGTGTGATCAACGTAGCTCAATATGGGATTCTGTTTTTATGGCTCGATGTGGGTGTTTAGATGCTTTGTCTAGAAAAGTTAACAGGTTGGCTGCGAAGTCAACGGTTAGATTTAATGCCATGAGAGATCTACTCACCGAGCAACTTAAGAAGATGGAAGACACAGATGAAGGGGACAATGAAGAGAATGAAGCTTGCAATCAATCAACACACAGAAAGGTGAGGGATCTAGTTAGAGTTGGTAGCAAGGGGTGTGCTGTCAATTCATCACCGAATTGTTCTCAAAAAAAGCGACGACAAAAGTGTGGCCTATGTGGTGAAGTCGGTCATAATAGGAAGACATGTTTGCTAAAGAGTAATTTTGACCATGGCATGATGTCTCAGGAGGCTTCCAGTATGCACTATGAAGAATTTGATAACTGTGAAGGCTAA 2169 0.3923 MGDNVDGISNGSGGLENIEEVTEDVVEVHNILEGMGFDSEKDFPIIDPMLLSSNLVSTFHFSDLEGRKRKKKNDDEEEEEEVVREPRPETRTECKAMMKVRVDCVSGRWHVCKFIEEHNHRLLKKIHTSMLPAHRKMTDADIMQLNNLGKVGIRTPHIYGYFASQSGGFQYVGFSKRDMYNQIGRQRMMQATNVKGAFQYLRDIGNCSGPMFWSHTIDNEGRLDHLFWCDGHSQIDYKVFGDVLAFDATYKRNKYHFPLVVFFGINHHNQTTVFASGVIANETEDTYVWLLEQLMVAMKGKAPLSVITDGDLAMRNAIKRVFPNSHHRLCAWHLLQNANCNVKNAKFLAGLKRCMLGDYEIYEFQRKWSQIVTECGLEENTWVKEMYEKRRMWASCYIRGQFFAGIRTTSRCEGLHAQLGRFVHSRNALVDFLQNYHHCLEYFRYKEIEADYRTLLGEPVLQTNLHALERSASRMFTKEIFKLFRPALSRGSTVMVKSCRELMSQTIYTVSKYGRPNKEWCVSYLAQPLLIRCSCKRMESFGLPCEHIVGVLVHLNINEIPSCIVLDRWTMVMKEKLYELCDQRSSIWDSVFMARCGCLDALSRKVNRLAAKSTVRFNAMRDLLTEQLKKMEDTDEGDNEENEACNQSTHRKVRDLVRVGSKGCAVNSSPNCSQKKRRQKCGLCGEVGHNRKTCLLKSNFDHGMMSQEASSMHYEEFDNCEG. 723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g04114 722 Pfam SWIM zinc finger 508 556 IPR007527 GO:0008270
Seca10g04114 722 SMART 26again6 531 558 IPR006564 GO:0008270
Seca10g04114 722 Pfam FAR1 DNA-binding domain 70 123 IPR004330 -
Seca10g04114 722 ProSiteProfiles Zinc finger SWIM-type profile. 508 556 IPR007527 GO:0008270
Seca10g04114 722 Coils Coil 61 81 - -
Seca10g04114 722 Pfam MULE transposase domain 243 337 IPR018289 -
Seca10g04114 722 MobiDBLite consensus disorder prediction 631 650 - -
Seca10g04114 722 MobiDBLite consensus disorder prediction 66 86 - -
Seca10g04114 722 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 26 632 IPR031052 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g04114 Seca-Chr10 91337835 91340290 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca10g04114 MULE 1.4e-29 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g04114 - - tpra:123913749 628.632