Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g04100 ATGGAGGGACATGGTGATATGGGTCTAATTGGAGAGAACTTTGATTCTGGTTTGATGGGAAGAATCAGAGATGATGAGTATGAAAGCAGGTCTGGAAGTGATAACTTTGATGGTGCATCTGGTGATGATCAAGATGCTGGTGATGATCAATCACAGAAGAAAAAGAAGAAGAAATACCATAGACACACTCCTCAACAAATTCAGGAGCTTGAAGCTTTCTTTAAGGAGTCTCCTCATCCTGATGAGAAGCAAAGATCAGATCTCAGTAAGAGGCTTGGCTTGGAGAACAAGCAAGTCAAGTTCTGGTTTCAGAACAGAAGAACCCAAATGAAGACACAACTGGAACGCCATGAGAACATGATTCTTAGGCAGGAAAATGACAAGCTCAGAGCTGAGAACAGTGTGATGAAGGAAGCTTTGGCAAATCCAATGTGTAACAGCTGTGGTGGACCAGCAATTCCTGGCCAAATTTCATTGGAGGAGCACCAAATTAGAATTGAAAATGCTCGATTAAAGGATGAATTGAACAGGATTTGTGCCTTGGCAAACAGGTTCTTGGGTAGGCCACTTTCATCCTTGGCCAGTCCCATGCCTCTGCCAACCCCAAATTCTGGTCTTGAACTTGGTATTGGAAGAAATGGGGCTGGTGGTTCAGGCAATTTTAGCATGTCCTTGCCAATGGGACTTGAGGTTGGAGATGGTGTTATGGGCACTCCACCACCTACACTACCTGGGATTAGATCATCAATGGGGTTGATTGGAAATGAAGTCCAGCTTGAGAGATCTATGCTAATAGATGTTGCAGTAGCTGCTATGGATGAATTGATTAAGATGACTCAGCCAGATAGCCCTCTTTGGATTAGGAGTTCAGATGGAAGCAGGGAAGTGCTGAACCATGAGGAGTATTCAAGGGTGTGTTCTTATATCAGGCCAAAACCCACTGGTTATGTAACTGAAGCTACTAGGGAAACTGGGTTAGTGATAATCAACAGTTTGGCCCTTGTGGACCTATTGATGGATGCGGATCGATGGTCAGAGATGTTTCCATCTATGATTGCTAGAGCTGTCACTTTGGATGTAATTTCTAGTGGAATGGGTGGAACCAGAAATGGAGCTTTACAAGTGATGCATGCTGAGGTTCAATTGCCTTCTCCACTAGTCCCTGTTCGTCAATTGAGTTTCCTCAGGTTCTGCAAGCAGCATGCAGAAGGTGTTTGGGCTGTGGTTGATGTTTCAGTTGACATTGGTCATAATGCTACAAATGGAATCCAATTCATGAACTGTAGGAGGCTTCCTTCTGGCTGTGTTGTGCAAGATATGCCCAATGGTTTCTCCAAGATTACTTGGGTTGATCACTCCCAGTATGATGAGAGTGTTGTCCACCAACTCTATCGCCCATTGGTTAATTCTGGCATTGGATTTGGTGCTCATAGATGGATTGCAACTCTCCAAAGGCAATGTGAATGCTTTGCAATCCTCATGTCCCCTTCCATACAACCTGAGGACCCCACAGCCATAAGCCAAGCTGGTAAGAGAAGCATTATGAAGCTTGCACAACGCATGACTGATTACTTCTGGTCTGGGATTTGTGTTTCATCGGCTTGCAAGTGGGACATCATTCACATTGGTGGTAACAATGACATGAGAATCATGTCTAGGAAACATGTGGATGAAAATGGTGAGTCTCAGGGCATTGTGCTGAGTGCTGCAACTTCTATATGGATACCAGTGTCAAGGCAGAGGGTGTTTGATTTCTTGCGTGATGGAAGGCTTAGAGGTGAGTGGGATGTCTTGTCTAGTGGTGGATCAATGCAGGAGATGTTCCATATTCCTAAAGCACAAGGACAAGGAAATTGTGTCTCTATCCTTCGTGCTAATAATGCTGCTAATGGGAACGAGAGCAATGTGCTATATCTGCAAGATTCATGGACTGATGTCTCTGGCTCGATGATTGTGTATTCACCAATGACTATGCAATCCTTGAACTTGGTGATGGCTGGTAGTGATTCTTCATTTGTTTTTCTCTTGCCTTCTGGGTTTGCTATTCTTCCAGATGGTCATTCAAGTGGTGTTGGAACTTCAAGTGATGGCAGTGGCAGTAGCAATGGTGGTGGTGGCGGTGACGGTGGTGGAAGTGTGGTTACAGTTGGGTTACAAATGCTGCTGAGTAACCTCCCAACAGCTAAGCTGACAATGGAGTCAGTTGAAACTGTTAATGGCCTCATCTCATGCACCATTCAGAAGATCAAAGATGCACTTGGAGTTGCATGA 2271 0.4456 MEGHGDMGLIGENFDSGLMGRIRDDEYESRSGSDNFDGASGDDQDAGDDQSQKKKKKKYHRHTPQQIQELEAFFKESPHPDEKQRSDLSKRLGLENKQVKFWFQNRRTQMKTQLERHENMILRQENDKLRAENSVMKEALANPMCNSCGGPAIPGQISLEEHQIRIENARLKDELNRICALANRFLGRPLSSLASPMPLPTPNSGLELGIGRNGAGGSGNFSMSLPMGLEVGDGVMGTPPPTLPGIRSSMGLIGNEVQLERSMLIDVAVAAMDELIKMTQPDSPLWIRSSDGSREVLNHEEYSRVCSYIRPKPTGYVTEATRETGLVIINSLALVDLLMDADRWSEMFPSMIARAVTLDVISSGMGGTRNGALQVMHAEVQLPSPLVPVRQLSFLRFCKQHAEGVWAVVDVSVDIGHNATNGIQFMNCRRLPSGCVVQDMPNGFSKITWVDHSQYDESVVHQLYRPLVNSGIGFGAHRWIATLQRQCECFAILMSPSIQPEDPTAISQAGKRSIMKLAQRMTDYFWSGICVSSACKWDIIHIGGNNDMRIMSRKHVDENGESQGIVLSAATSIWIPVSRQRVFDFLRDGRLRGEWDVLSSGGSMQEMFHIPKAQGQGNCVSILRANNAANGNESNVLYLQDSWTDVSGSMIVYSPMTMQSLNLVMAGSDSSFVFLLPSGFAILPDGHSSGVGTSSDGSGSSNGGGGGDGGGSVVTVGLQMLLSNLPTAKLTMESVETVNGLISCTIQKIKDALGVA. 757
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g04100 756 SMART HOX_1 55 117 IPR001356 GO:0003677
Seca10g04100 756 CDD START_ArGLABRA2_like 261 488 - -
Seca10g04100 756 CDD homeodomain 60 113 IPR001356 GO:0003677
Seca10g04100 756 ProSitePatterns 'Homeobox' domain signature. 88 111 IPR017970 GO:0000981|GO:0006355
Seca10g04100 756 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 50 753 IPR042160 -
Seca10g04100 756 Pfam Homeodomain 56 111 IPR001356 GO:0003677
Seca10g04100 756 MobiDBLite consensus disorder prediction 1 64 - -
Seca10g04100 756 MobiDBLite consensus disorder prediction 18 32 - -
Seca10g04100 756 ProSiteProfiles START domain profile. 257 492 IPR002913 GO:0008289
Seca10g04100 756 Coils Coil 107 142 - -
Seca10g04100 756 ProSiteProfiles 'Homeobox' domain profile. 53 113 IPR001356 GO:0003677
Seca10g04100 756 Pfam START domain 267 489 IPR002913 GO:0008289
Seca10g04100 756 SUPERFAMILY Homeodomain-like 44 113 IPR009057 -
Seca10g04100 756 FunFam Homeobox-leucine zipper protein HDG1 40 129 - -
Seca10g04100 756 SUPERFAMILY Bet v1-like 259 490 - -
Seca10g04100 756 Gene3D - 42 129 - -
Seca10g04100 756 FunFam Homeobox-leucine zipper protein GLABRA 2 266 488 - -
Seca10g04100 756 SUPERFAMILY Bet v1-like 515 750 - -
Seca10g04100 756 SMART START_1 266 489 IPR002913 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g04100 Seca-Chr10 90695361 90701719 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g04100 1 753 Homeobox Transcription Factor Family AT3G61150 54.096 0.0 809
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Seca10g04100 START 1.2e-45 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g04100 K09338 - gmx:100794400 1081.63