Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g04071 ATGAGACCCAGATATCGACCATTGAGACACCAGATTAACAATAGTGTCAATCGGGATGGTTTAATGTCTTCCAAGCGCAAAAGAGCGGTGGAGACTAAATCAACACCTCGACGTGAAGGTCTACGACCTCGTCGTTCAAGGGCTGCTGCAAGAGAACAAATAATTTCAGAATCGGATGATGAGCAAGACCTTTCAGAAGAGAAGGTTGAACAAGATGAAACAGAACATGGAAATGATGTTGAGGAAAATGATGCAGATGAGGGTCAAAATGAGATCGAGGGGGATGTTGAGGGCGAAGATGAAGGTGAGGATGAAGGTGATGAAGATGGTGATGATGAAGAGGGTGAAGAAGAGCAGGATGGTAGAAGGCGCTACGATCTTCGAAATCGTTCAGATGTCCGCAGGATCTCTATGGAGGAAGGGAAAACCCGGCCAAGATCTCCTCGAAGAGTGTTACATCAAGGTATGGGAACTAAGGTCAACAGGGATGTAAGGAAGGGTGGATCACGAGTTCATAAGCGTCATCGCTTAGCAAGGCCTGAAGATTCTGATGACTCCCTTCTTGTGGATGAGTTGGACCAAGGCCCTGCAATTCCATGGGGGCGAGGTGGCAGCAGATCTGGCCCGCCTTGGCTTTTTGGGGGTGTAGACATGCATGGAACAGCGGCTTGGGGATTAAATCTTGCTGCATCAGGTTGGGGCCATCAAGGTGATGCTTTGGCTACTCTAACTTCTGGGATTCAAACTGCTGGGCCAAGCTCTAAGGGAGGGGCAGATATCCAACCCTTACAGGTTGATGATAGTGTTAGCTTTGATGATATAGGTGGGCTCTCTGAATACATTGATGCTCTAAAGGAAATGGTTTTCTTTCCATTATTGTATCCAGATTTTTTTGCAAGTTACCACATAACTCCACCTAGGGGGGTGTTGTTATGTGGGCCCCCTGGCACGGGGAAAACGTTAATTGCAAGAGCTTTGGCTTGTGCTGCTTCAAAAGCTGGCCAAAAGGTTAGCTTTTACATGCGCAAAGGAGCAGATGTGCTAAGCAAGTGGGTTGGTGAGGCTGAAAGACAATTGAAACTACTCTTTGAGGAAGCACAAAGGAATCAACCTTCAATTATCTTCTTTGATGAAATAGATGGACTAGCACCTGTGAGGTCTAGTAAGCAAGAGCAAATTCACAATTCCATTGTATCCACTTTGCTTGCTTTGATGGATGGTCTTGATTCTCGTGGACAAGTTGTTTTAATTGGAGCTACCAACAGGATTGATGCTATTGACGGAGCCTTGCGACGTCCTGGTAGATTTGATCGTGAATTTAACTTTCCCTTGCCTGGTTGTGAGGCACGTGCTGAAATATTAGACATTCATACTCGTAAGTGGAAGCATCCTCCTCCAGAGGAACTGAAAAAGGAACTTGCAGCTAGTTGTGTAGGTTATTGTGGTGCTGATCTAAAGGCTCTCTGTACTGAAGCTGCCATTCGTGCTTTCCGTGAAAAATATCCACAGGTTTATACAAGTGATGACAAATTTCTCATAGATGTTGATTCTATCAGGGTAGAAAAGTATCATTTTATTGAAGCAATGTCTACAATTACTCCTGCTGCTCATAGGGGAGCTATTGTGCACTCTAGGCCATTGTCTCTAGTAGTTCAACCCTGTCTTCAGAGACATCTAGAGAAAGCCATGAGTATTATATCTGATATTTTCCATCCAGTATCTGTTGCATCAGAATTGACCAAACTTTCTATGCTTTCATACGGGTCTGCAATTCCACTTGTGTATCGGCCTAGGCTTCTACTTTGTGGTGGTGAAGGTACAGGGTTGGATCATCTTGGACCTGCGGTTTTACATGAACTTGAAAAATTTCCTGTACATTCGTTAGGACTTCCATCTCTTCTATCAGATCCTAGCGCAAAGACACCAGAGGAGGCATTGGTGCACATATTTGGTGAAGCGAGAAGAACAACACCATCAATTCTCTATTTACCGCAGTTTGTTGTTTGGTGGGAAACTGCTCATGAACAGCTCAGAGCTGTTCTCCTGACTCTGCTAGAAGAATTGCCTTCTGACTTACCTATCTTACTACTCGGGACATCCTCAGTTGCACCTGCTGAAGTTGAGGAAGTGCCTACTTCAGTTTTTCCTCATCACTCAGTTTATGAAGTGAACATGCCATCTACCAAAGATAGGACTTTGTTTTTTGACCGTTTAATAGAAGCTGCTCTGTCGGTATTGTTGGAGGGAATGAGCAGGAAATCCCAGGATACAGGATGTCTTTCTGAACTTCCTAAGGCACCAAAATTGGCAAGTGGTCCAAAGGTATCTGAGCTAAAAGCAAAGGTGGAAGCCGAGCAACATGCACTTCGTAGATTGCGAATGTGCCTTAGAGATGTTTGCAACCGGATATTATATGACAAGCGATTTAATGCCTTCCATTATCCAGTCTCAGATGAAGATGCACCTAATTATCGCTCAATTATACAGAACCCAATGGACATGGCTACTGTCCTGCAGCATGTTGATAATGGCCACTATATTACATCTGCTGCATTCCTGCAGGACATTGATCTCATTGTTTCCAATGCAAAGGCTTACAATGGAGATGACTACAATGGTGCTAGGATTGTCAGTAGAGCTTGTGAGCTCCGTGATGCGGTGCATGGGATGCTCTCACAGATGGATCCAGCACTGGCTGCATACTGTGACAAGATTGCTAGTCAAGGTGGCCCAGTTCATTTTCCTGATGAATTAGGGGATTCTACATTCCCTGCTACTCCTGTTGTACAGCTGGGTACTGCTACTAGAATGAGTGCTCGACTTCGTCATGTCCAACCAGAGGTTAATATGGATCAGAGTTATGAAGCATTGAAGCGGACTAAGAAGATCGGTGATGTGCATGCAGAAGACAAATCACAAGATTCAATACCTGCAAAGTCCTCCCAGGAGCATCAGGCAAATGAAATGAATTCTGAAAGGCTGGAACCTGTAGAAGTTGATGGAAACTTGCATGGAACTTGTACAAATAGCCTTGCTGATGGCAGTAGCCTTCATGATGTTGCAATGCTAGATGGTGAATTTTCAAGACAAGTGGAGTCGATCAAGCAGCATTTTGTTAAGCGTAGTGAAAATTACAGCATTCCACAACTTGAAAGGCTTTACACGAGAATTATGAAGGGCGTGTTTGAAACTAAGGATAAAGGAATGAATGGTGAACTGACTTCGATTTTGAGCTTTTTGTTCAAATTTGTAGAGGATGATGCAAATTTCTGA 3273 0.4412 MRPRYRPLRHQINNSVNRDGLMSSKRKRAVETKSTPRREGLRPRRSRAAAREQIISESDDEQDLSEEKVEQDETEHGNDVEENDADEGQNEIEGDVEGEDEGEDEGDEDGDDEEGEEEQDGRRRYDLRNRSDVRRISMEEGKTRPRSPRRVLHQGMGTKVNRDVRKGGSRVHKRHRLARPEDSDDSLLVDELDQGPAIPWGRGGSRSGPPWLFGGVDMHGTAAWGLNLAASGWGHQGDALATLTSGIQTAGPSSKGGADIQPLQVDDSVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRIDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKHPPPEELKKELAASCVGYCGADLKALCTEAAIRAFREKYPQVYTSDDKFLIDVDSIRVEKYHFIEAMSTITPAAHRGAIVHSRPLSLVVQPCLQRHLEKAMSIISDIFHPVSVASELTKLSMLSYGSAIPLVYRPRLLLCGGEGTGLDHLGPAVLHELEKFPVHSLGLPSLLSDPSAKTPEEALVHIFGEARRTTPSILYLPQFVVWWETAHEQLRAVLLTLLEELPSDLPILLLGTSSVAPAEVEEVPTSVFPHHSVYEVNMPSTKDRTLFFDRLIEAALSVLLEGMSRKSQDTGCLSELPKAPKLASGPKVSELKAKVEAEQHALRRLRMCLRDVCNRILYDKRFNAFHYPVSDEDAPNYRSIIQNPMDMATVLQHVDNGHYITSAAFLQDIDLIVSNAKAYNGDDYNGARIVSRACELRDAVHGMLSQMDPALAAYCDKIASQGGPVHFPDELGDSTFPATPVVQLGTATRMSARLRHVQPEVNMDQSYEALKRTKKIGDVHAEDKSQDSIPAKSSQEHQANEMNSERLEPVEVDGNLHGTCTNSLADGSSLHDVAMLDGEFSRQVESIKQHFVKRSENYSIPQLERLYTRIMKGVFETKDKGMNGELTSILSFLFKFVEDDANF. 1091
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g04071 1090 PANTHER AAA DOMAIN-CONTAINING 962 1068 IPR045199 -
Seca10g04071 1090 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 593 808 IPR027417 -
Seca10g04071 1090 SMART AAA_5 305 446 IPR003593 GO:0016887
Seca10g04071 1090 CDD RecA-like_Yta7-like 273 442 - -
Seca10g04071 1090 SUPERFAMILY Bromodomain 787 900 IPR036427 GO:0005515
Seca10g04071 1090 FunFam ATPase family AAA domain-containing protein 2B 445 530 - -
Seca10g04071 1090 MobiDBLite consensus disorder prediction 966 993 - -
Seca10g04071 1090 Gene3D - 445 530 - -
Seca10g04071 1090 FunFam ATPase family, AAA domain-containing 2 267 450 - -
Seca10g04071 1090 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 268 534 IPR027417 -
Seca10g04071 1090 Gene3D - 781 909 IPR036427 GO:0005515
Seca10g04071 1090 Pfam ATPase family associated with various cellular activities (AAA) 309 444 IPR003959 GO:0005524|GO:0016887
Seca10g04071 1090 MobiDBLite consensus disorder prediction 117 147 - -
Seca10g04071 1090 Pfam Bromodomain 802 870 IPR001487 GO:0005515
Seca10g04071 1090 CDD Bromo_AAA 789 898 - -
Seca10g04071 1090 PRINTS Bromodomain signature 821 837 IPR001487 GO:0005515
Seca10g04071 1090 PRINTS Bromodomain signature 855 874 IPR001487 GO:0005515
Seca10g04071 1090 PRINTS Bromodomain signature 837 855 IPR001487 GO:0005515
Seca10g04071 1090 MobiDBLite consensus disorder prediction 76 116 - -
Seca10g04071 1090 Pfam AAA+ lid domain 471 508 IPR041569 -
Seca10g04071 1090 SMART bromo_6 789 896 IPR001487 GO:0005515
Seca10g04071 1090 FunFam ATPase family AAA domain-containing protein 781 909 - -
Seca10g04071 1090 MobiDBLite consensus disorder prediction 1 184 - -
Seca10g04071 1090 MobiDBLite consensus disorder prediction 21 58 - -
Seca10g04071 1090 ProSitePatterns AAA-protein family signature. 414 432 IPR003960 GO:0005524|GO:0016887
Seca10g04071 1090 ProSiteProfiles Bromodomain profile. 812 874 IPR001487 GO:0005515
Seca10g04071 1090 Gene3D - 267 537 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g04071 Seca-Chr10 89876934 89882710 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g04071 255 509 Calmodulin-binding Proteins AT3G56690 36.293 6.96e-41 161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g04071 K22531 - gmx:100787765 1862.81