Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g04055 ATGTCACATTCTCGGGTGGCAGGAGGGTTAACCCAATCATCATCAAGTTCTGGAATTTTTTTTCAAGGAGACGGGCAGTCACAGAATGTAGTTAACTCTCACTTAAGCTCGTCTTTTGTTAACTCATCTAACACAGTTCCTGGAACCAGTCGTTCTAACCTTGGTCCGGTTTCTGGGGATATGAATAATGCAGTTTTGAACAGTGTGGCAAACTCAGCACCAAGTGTGGGAGCCAGTTCTTTAGTCACAGATGCAAATTCTGCACTCTCTGGTGGCCCCCATTTGCAGAGAAGTGCAAGCTTCAATACAGACCCATACTTACGTTTACCTGCCTCACCCATGTCATTTACATCAAATAATATCAGTATTTCTGGATCATCAGTGATGGATGGTTCCTCTGTAGTACAGCAAAGTTCTCATCAAGATCAGAATGCTCAACAATTGCAGCAGAATCAGCAGCAGCAGCAGGGTGCTTCAAGTGTTGCGGCTTTGCCTGTATCTCAAACTGGCCCATCTCCACTCCAAATGGGTGCACATGTAGCAGGATCTTTCATTCAAGATCCAAATATCCACCTGGCTAAGAAACCTAGGCTGGATATCAAGCAGGATGATATAATGCAACAGCAGGTAATACAACAGCTTCTTCAGAGACAAGACCCCATGCAATTCCAAGGTCGTAATCCACAGCTACAGGCTTTGCTTCAGCAGCAGCAGAGGCTGAGGCAACAACAAATATTTCAGTCATTGCCACAGTTACAGCGAGCGCACTTGCAACAGCAGCAGCAGCAACAACAAATGCAATTGAGGCAGCAATTACAGCAACAAATGATGCAGCAGCCCTTATCTTCTATGAAGCGTCCACATGATAGTGGTGTTGGTGGGGTATGTTCCCGCCGATTAATGCAGTACCTCTATCATCAAAGGCAACGGCCACCTGTGAGTTCTGTTTGTTTGCTTTATGTGATCATCTGTCTTATGATTCCTTTAGCCCTTACAGCAGTGATGATCTATGATTTGTGTGATGTGGATAATAGCATTGGCTATTGGAGAAAATTTGTGGCCGAATATTACTCTCCTCGTGCAAAGCAACGTTGGTGCTTGTCATTATATAGTAATGTTGGGCAACATGCATTTGGTGTTTTCCCCCAAGTGGCTATGGGTGCATGGCAGTGTGACATATGTGGTTCTAAATCTGGAAAGGGATTTGAGGCAACTTTTGATGTACTGCCTAGACTTAATGAAATCAAATTTGGCAGTGGATTGATCGATGAACTTTTGTTTTTGGACATGCCACGTGAAATAAGATCTCCTTCTGGTGCGATGATGTTAGAATATACAAAAGCTGTTCAAGAGTGTGTGTATGAGCAGCTTCGCGTTGTTCGTGAGGGTCAACTCCGTATCATATTCACTCAAGACCTGAAGATATTTTCTTGGGAGTTCTGTGCAAGGCGCCATGAAGAACTTCTTCCTCGAAAGTTGGTTGCACCACAGGTCAACCAATTGGTTCAGGTAGCTCAAAAATGCCAGAGTACAATTGCTGAAAGTGGGTCAGATGGGGTTTCTCAGCAAGACTTGCAAACAAACAGCAACATGGTTTTGACAGCTGGCCGTCAGCTTGCAAAGAGTTTGGAGCTACAATCACTAAATGACTTGGGCTTTTCAAAAAGATATGTGAGGTGTTTGCAGATTTCTGAAGTTTGCAATAGCATGAAAGATCTCATAGATACCTGTTATGATCGCAAAATTGGAGCAATTGAGAGCTTGAAAGAATTTCCTCGAGTCACGGCTGAAGCAAAGCTCCAGATGCAAAAGATGCCAGAGATGGAACAGCTAGCAAATGTTCAAGGTCTGCCCACTGATCGTAACACACTTAATAAGCTGATGGCAATGAATCCTGCAATGAACAACCATATAAACAACAATCACAACAATATGGTTAATCGTGGTGGTTCTTTGGGTGGGTCAGCACAAGCTGCTATGGCACTGACCAACTACCAGAGTCTTGTGAGGCAAAACTCAACGAATTCAAGCCCTGGCTCACTTCAGCGAGAAAGACCCTCTTTCAGTAACACAAACCAGAGTCCCTCTTCCGCTGTGCAAGGTGCTGGTACTGCTTTAATTCCAGGTTCAATGCAGAATTCACCTGTTAGTGGTTTCCCAAGTCCACATTTACCCCCACAGCATCAGCAGCAGCAACAACATCTTCAACCACACTCATTAAGTGCAAATAGTTTACTGCAACAGAATCATTCACAAGGATCCCAAGGAAATCAAGCTCTGGATCAGCAGATGATCCAGCAAATACTGCAGATGTCAAATAACAATGGGGGAGTGCAACCACAGTCTCTTGGTGGACCCAATGCAAATGGGAATATGGCAAAGAGTGGGTTGGGTTTTGGGAGCCAAACTCCAGCCATAAGTGGAGGCTCTGCCAATGTTCCTGGGAATAATCGACCTGTTTCAAGGAGTAATAGCTTCAAGGCGGCTTCAAACAGTGATTCTTCTGCAGCTGGAGGCAACAATGGATTCAACCAGAGAACATCTGATATGTCACAAAATCTCCATTTGCAAGATGTGGTTCATAACATTGCCCCTGAGTTCACGGATAATCACTTCTTTAACAGTGATCTAGATGATAACATGGGTTTTGACTGGAAGGCATGA 2664 0.4418 MSHSRVAGGLTQSSSSSGIFFQGDGQSQNVVNSHLSSSFVNSSNTVPGTSRSNLGPVSGDMNNAVLNSVANSAPSVGASSLVTDANSALSGGPHLQRSASFNTDPYLRLPASPMSFTSNNISISGSSVMDGSSVVQQSSHQDQNAQQLQQNQQQQQGASSVAALPVSQTGPSPLQMGAHVAGSFIQDPNIHLAKKPRLDIKQDDIMQQQVIQQLLQRQDPMQFQGRNPQLQALLQQQQRLRQQQIFQSLPQLQRAHLQQQQQQQQMQLRQQLQQQMMQQPLSSMKRPHDSGVGGVCSRRLMQYLYHQRQRPPVSSVCLLYVIICLMIPLALTAVMIYDLCDVDNSIGYWRKFVAEYYSPRAKQRWCLSLYSNVGQHAFGVFPQVAMGAWQCDICGSKSGKGFEATFDVLPRLNEIKFGSGLIDELLFLDMPREIRSPSGAMMLEYTKAVQECVYEQLRVVREGQLRIIFTQDLKIFSWEFCARRHEELLPRKLVAPQVNQLVQVAQKCQSTIAESGSDGVSQQDLQTNSNMVLTAGRQLAKSLELQSLNDLGFSKRYVRCLQISEVCNSMKDLIDTCYDRKIGAIESLKEFPRVTAEAKLQMQKMPEMEQLANVQGLPTDRNTLNKLMAMNPAMNNHINNNHNNMVNRGGSLGGSAQAAMALTNYQSLVRQNSTNSSPGSLQRERPSFSNTNQSPSSAVQGAGTALIPGSMQNSPVSGFPSPHLPPQHQQQQQHLQPHSLSANSLLQQNHSQGSQGNQALDQQMIQQILQMSNNNGGVQPQSLGGPNANGNMAKSGLGFGSQTPAISGGSANVPGNNRPVSRSNSFKAASNSDSSAAGGNNGFNQRTSDMSQNLHLQDVVHNIAPEFTDNHFFNSDLDDNMGFDWKA. 888
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g04055 887 MobiDBLite consensus disorder prediction 1 21 - -
Seca10g04055 887 Coils Coil 254 278 - -
Seca10g04055 887 MobiDBLite consensus disorder prediction 127 177 - -
Seca10g04055 887 PANTHER LIM DOMAIN-BINDING PROTEIN 41 873 IPR029005 -
Seca10g04055 887 MobiDBLite consensus disorder prediction 38 59 - -
Seca10g04055 887 MobiDBLite consensus disorder prediction 773 848 - -
Seca10g04055 887 MobiDBLite consensus disorder prediction 127 174 - -
Seca10g04055 887 Pfam LIM-domain binding protein 343 589 IPR029005 -
Seca10g04055 887 MobiDBLite consensus disorder prediction 671 737 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g04055 Seca-Chr10 88905417 88911033 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g04055 294 596 C2H2 Transcription Factor Family AT1G43850 52.475 7.60e-99 327
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g04055 - - gmx:100816886 1113.6