Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g04053 ATGGCACATTCTCGGGTGGCAGGAGGGTTAACCCAATCATCATCAAGTTCTGGAATTTTTTTTCAAGGAGACGGGCAGTCACAGAATGTAGTTAACTCTCACTTAAGCTCGTCTTTTGTTAACTCATCTAACACAGTTCCTGGAACCAGTCGTTCTAACCTTGGTCCGGTTTCTGGGGATATGAATAATGCAGTTTTGAACAGTGTGGCAAACTCAGCACCAAGTGTGGGAGCCAGTTCTTTAGTCACAGATGCAAATTCTGCACTCTCTGGTGGCCCCCATTTGCAGAGAAGTGCAAGCATTAACACAGACCCATACTTACGTTTACCTGCCTCACCCATGTCATTTACATCAAATAATATCAGTATTTCTGGATCATCAGTGATGGATGGTTCCTCTGTAGTACAGCAAATTTCTCATCAAGATCAGAATGCTCAACAATTGCAGCAGAATCAGCAGCAGCAGCAGGGTGCTTCAAGTGTTGCGTCTTTGTCTGTATCTCAAACTGGCCCATCTGCACTCCAAATGGGTGCACATGTAGCAGGATCTTTCATTCAAGATCCAAATATCCACCTGGCAAAGAAACCAAGACTGGATATCAAGCAGGATGATATAATGCAACAGCAGGTAATACAACAGCTTCTTCAGAGACAAGACCCCATGCAATTCCAAGGTCGTAATCCACAGCTACAGGCTTTGCTTCAGCAGCAGCAGAGGCTAAGGCAACAACAAATATTTCAGTCATTGCCACAGTTACAGCGAGCGCACTTGCAACAACAGCAGCAGCAACAACAACAAATGCAATTGAGGCAGCAATTACAGCAACAAATCATGCAGCAGCCCTTATCTTCTATTAAGCGTCCACATGATAGTGGTGTTGGTGGGGTATGTTCCCGCCGATTAATGCAGTACCTCTATCATCAAAGGCAACGGCCAACTGATAATAGCATTGCCTATTGGAGAAAATTTGTGGCCGAATATTACTCTCCTCGTGCAAAGCAACGGTGGTGCTTGTCATTATATAGTAATGTTGGGCAACATGCACTTGGTGTTTTCCCCCAAGTGGCTATGGGTGCATGGCAGTGTGACATATGTGGTTCTAAATCTGGAAAGGGATTTGAGGCAACTTTTGATGTACTGCCTAGACTTAATGAAATCAAATTTGGCAGTGGATTGATCGATGAACTTTTGTTTTTGGACATGCCACGTGAAATAAGATCTCCTTCTGGTGCGATGATGTTAGAATATACAAAAGCAGTTCAAGAGTGTGTGTATGAGCAGCTTCGTGTTGTTCGTGAGGGTCAACTTCGTATCATATTCACTCAAGACCTGAAGATATTTTCTTGGGAGTTCTGTGCAAGGCGCCATGAAGAACTTCTTCCTCGAAAATTGGTTGCACCACAGGTCAACCAATTGGTTCAGGTAGCTCAAAAATGCCAGAGTACAATTGCTGAAAGTGGGTCAGATGGGGTTTCTCAGCAAGACTTGCAAACAAACAGCAACATGGTTTTGACAGCTGGCCGTCAGCTTGCAAAGAGTTTGGAGCTACAATCACTAAATGACTTGGGCTTTTCAAAAAGATATGTGAGGTGTTTGCAGATTTCTGAAGTTTGCAATAGCATGAAAGATCTCATAGATACCTGTTATGATCGCAAAATTGGAGCAATTGAGAGCTTGAAAAAATTTCCTCGAGTCACGACTGAAGCAAAGCTCCAGATGCAAAAGATGCCAGAGATGGAACAGCTAGCAAATGTTCAAGGTCTGCACACTGATCGTAACACACTTAATAAGCTGATGGCAATGAATCCTGCAATGAACAACCATATAAACAACAATCACAACAATATGGTTAATCGTGGTGGTTCTTTGGGTGGGTCAGCACAGGCTGCTATGGCACTGACCAACTACCAGAGTCTTGTGAGGCAAAATTCAACGAATTCAAGCCCTGGCTCACTTCAGCGAGAAAGACCCTCTTTCAGTAACTCGAACCAGAGTCCCTCTTCTGCTGTGCAAGGTGCTGGTACTGCTTTAATTCCAGGTTCAATGCAGAATTCACCTGTTAGTGGTTTCCCAAGTCCACATTTACCCCCACAGCATCAGCAGCAGCAACAACATCTTCAACCACACTCATTAAGTGCAAATAGTTTACTGCAACAGAATCATTCACAAGGATCCCAAGGAAATCAAGCTCTGGATCAGAAGATGATCCAGCAAATACTGCAGATGTCAAATAACAATGGGGGAGTGCAACCACAGTCTCTTGCTGGACCCAATGCAAATGGGAATATGGCAAAGAGTGGGTTGGGTTTTGGGGGCCAAACTCCAGCCATAAGTGGAGGCTCTGCCAATGTTCCTGGGAATAATGGACCTGTTTCAAGGAGTAATAGCTTCAAGGCGGCTTCAAACAGTGATTCTTCTGCAGCTGGAGGCAACAATGGATTCAACCAGAGAACATCTGATATGTCACAAAATCTCCATTTGCAAGATGTGGTTCATAACATTGCCCCTGAGTTCACGGATAATCACTTCTTTAACAGTGATCTAGATGATAACATGGGTTTTGACTGGAAGGCATGA 2577 0.4397 MAHSRVAGGLTQSSSSSGIFFQGDGQSQNVVNSHLSSSFVNSSNTVPGTSRSNLGPVSGDMNNAVLNSVANSAPSVGASSLVTDANSALSGGPHLQRSASINTDPYLRLPASPMSFTSNNISISGSSVMDGSSVVQQISHQDQNAQQLQQNQQQQQGASSVASLSVSQTGPSALQMGAHVAGSFIQDPNIHLAKKPRLDIKQDDIMQQQVIQQLLQRQDPMQFQGRNPQLQALLQQQQRLRQQQIFQSLPQLQRAHLQQQQQQQQQMQLRQQLQQQIMQQPLSSIKRPHDSGVGGVCSRRLMQYLYHQRQRPTDNSIAYWRKFVAEYYSPRAKQRWCLSLYSNVGQHALGVFPQVAMGAWQCDICGSKSGKGFEATFDVLPRLNEIKFGSGLIDELLFLDMPREIRSPSGAMMLEYTKAVQECVYEQLRVVREGQLRIIFTQDLKIFSWEFCARRHEELLPRKLVAPQVNQLVQVAQKCQSTIAESGSDGVSQQDLQTNSNMVLTAGRQLAKSLELQSLNDLGFSKRYVRCLQISEVCNSMKDLIDTCYDRKIGAIESLKKFPRVTTEAKLQMQKMPEMEQLANVQGLHTDRNTLNKLMAMNPAMNNHINNNHNNMVNRGGSLGGSAQAAMALTNYQSLVRQNSTNSSPGSLQRERPSFSNSNQSPSSAVQGAGTALIPGSMQNSPVSGFPSPHLPPQHQQQQQHLQPHSLSANSLLQQNHSQGSQGNQALDQKMIQQILQMSNNNGGVQPQSLAGPNANGNMAKSGLGFGGQTPAISGGSANVPGNNGPVSRSNSFKAASNSDSSAAGGNNGFNQRTSDMSQNLHLQDVVHNIAPEFTDNHFFNSDLDDNMGFDWKA. 859
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g04053 858 Coils Coil 252 272 - -
Seca10g04053 858 PANTHER LIM DOMAIN-BINDING PROTEIN 41 844 IPR029005 -
Seca10g04053 858 MobiDBLite consensus disorder prediction 744 819 - -
Seca10g04053 858 MobiDBLite consensus disorder prediction 776 819 - -
Seca10g04053 858 MobiDBLite consensus disorder prediction 132 164 - -
Seca10g04053 858 Pfam LIM-domain binding protein 300 560 IPR029005 -
Seca10g04053 858 MobiDBLite consensus disorder prediction 642 708 - -
Seca10g04053 858 MobiDBLite consensus disorder prediction 744 760 - -
Seca10g04053 858 MobiDBLite consensus disorder prediction 38 57 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g04053 Seca-Chr10 88776403 88782697 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g04053 281 566 C2H2 Transcription Factor Family AT1G43850 56.993 4.66e-107 348
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g04053 - - gmx:100816886 1137.87