Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g04042 ATGTCTGCGGACAAAAGAAAGTGTGTCAGGTCCAGCAGCTTGAAAAATGGTGCAGCACTTTATATTCTGAAACCCTTTTGTGGAGATGACTTCAAAGACATTTGGAAGTATGCAGCGGCTGCAAGGAAAGGGAAACTAGTGATTGAAAATGAATTGAGAAGCAGAGAAGGTGAGTCACCAAATGAGAAGATTATCATTCAGGATGTTGACTCCTCTGCTGCTGCGTCATCATCAACTGAACCTAAGAGAAAAAGAAAGCATGGCAAGGGAAAGAGTAAAAAGGAAGACCAAAGTGAAGGAAGGTGTCAGGTTGCAAAGAAACCAAAGTTGGTCTGGACAACGTATCTTCAAAATCTTTTTCTGCTTGCCATAAGACAAATTGGATTGGACAGGGCGGTGCCAAAGAAAATTCTCGAGATCATGAATGTACCATACTTGACCAGAGAAAATGTTGCCAATCACTTACAGCAATATTTGAAAAGATTGTCATATCAAGCAGGAAACAGAACAATAACCTCTACTCTTAATCCTTTCAACTATGGTCCAATGAGTCTTTCTGATCAACAAGTTTCAAGCAACAATTATGTGACTACTCAACTTGGGACAGGTCAATTCCCCTATCCATTGCACAATGGCCTGATGCTTCAAAACCAGCATGGTAGTTCTTTGAAAGTCAGACTTGGACAATCAAGCTTTGGAAGCCATAATATTGGGACTAATAATATTATTGGACAATCAAGCTATGCAAAACCACCATATCAAGCAAATAGCTCATACAATTCTGGTGCTATCTTTCCACCATATGGAGGTGGACATGGTTTGATGACATCTGCTAATGGCCTAATAGGAGGTTACCAAAACTATGGTTCAATGGGAAATCACAACTTTAGCTATGATCCAGGAAACTGGAACATGGGAAATTTGAGCAGCTCTAATGTCCTGCCTCAGACTTCTACTTATTATAACTCTGGAATTCAACAGAATGATGGATCACAAATGGTAGGGACTGGGATAAAAGGAGGGATTAACAATGTTGGTACTACAAACAACAATAGCTTTGACTTTAACAATGTTAATACTGCATACAACAATAGCTTTGGCTTTAACAATGTTGGTAATGCAAACAATGGCTTTGGCTTCATCAATGGGAAACAAAATGCAAACATGAATGTGTCATCCTTGGGGAATGGAGATGTTGGTTTAGTTCAAGGACAGTTTGCTTTTCCTTCCTCTGCATCTAATGTTGGGGATGTGTGTGCAAGTGAGCTTCCACCACCAGCATTGATCACTGATGGAACACTAGAAGAAAATGTTTCAGGGCTCCCACCATTGCCTCAGCAACTAGATGACATTGTTGTAGAAAATGAGCATCAGAATAATAATGTCACTTCAATCAGTGAGAAAGAGAACCCAAATGCAAGTGAATTTCTTAATTCTGACTTCTCTCGCCCATGCCATGTTGTGCAACCCCTTGAGAAGGATAATAGAGATGATTATGTGATTGCTCCTCCAGCCACAAGCACAGTAAATCTGCCAATCGAGTCCCTAGGAAGCTCAGACAAAAATTCAAATCAGGCAAGTGATGACGGATTTGCGGAGCAGGAGGAATTCTTTGATAGGCTCTTTGGCGACAATGTTTCTTCAGCAAGTAATTCAGCAACTGAGCAGGATTGGGATATGGATGTTATTGAAGCCTTGTTCGGGCAAGCTGTGCCCATGTGCATCCGCCCCTGTCAAACTTGTATGAGGTCAATGCCATTGAAAAGACAACCAGAGGCTACCCAAAACTTGAAAACTATGCGATATGCAGTAGCAGATGCCATTGTAGTGTTGTCATCATGTGATACACGATTGGTTGTTCAAAATTGA 1869 0.4088 MSADKRKCVRSSSLKNGAALYILKPFCGDDFKDIWKYAAAARKGKLVIENELRSREGESPNEKIIIQDVDSSAAASSSTEPKRKRKHGKGKSKKEDQSEGRCQVAKKPKLVWTTYLQNLFLLAIRQIGLDRAVPKKILEIMNVPYLTRENVANHLQQYLKRLSYQAGNRTITSTLNPFNYGPMSLSDQQVSSNNYVTTQLGTGQFPYPLHNGLMLQNQHGSSLKVRLGQSSFGSHNIGTNNIIGQSSYAKPPYQANSSYNSGAIFPPYGGGHGLMTSANGLIGGYQNYGSMGNHNFSYDPGNWNMGNLSSSNVLPQTSTYYNSGIQQNDGSQMVGTGIKGGINNVGTTNNNSFDFNNVNTAYNNSFGFNNVGNANNGFGFINGKQNANMNVSSLGNGDVGLVQGQFAFPSSASNVGDVCASELPPPALITDGTLEENVSGLPPLPQQLDDIVVENEHQNNNVTSISEKENPNASEFLNSDFSRPCHVVQPLEKDNRDDYVIAPPATSTVNLPIESLGSSDKNSNQASDDGFAEQEEFFDRLFGDNVSSASNSATEQDWDMDVIEALFGQAVPMCIRPCQTCMRSMPLKRQPEATQNLKTMRYAVADAIVVLSSCDTRLVVQN. 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g04042 622 MobiDBLite consensus disorder prediction 69 101 - -
Seca10g04042 622 MobiDBLite consensus disorder prediction 510 529 - -
Seca10g04042 622 FunFam Two-component response regulator 103 165 - -
Seca10g04042 622 Gene3D - 104 164 - -
Seca10g04042 622 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 71 386 IPR044841 GO:0003700|GO:0006355
Seca10g04042 622 NCBIfam myb-like DNA-binding domain, SHAQKYF class 107 160 IPR006447 GO:0003677
Seca10g04042 622 SUPERFAMILY Homeodomain-like 105 162 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g04042 Seca-Chr10 87610508 87614336 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g04042 1 165 Response Regulator Gene Family AT5G07210 37.173 3.15e-25 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Seca10g04042 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g04042 - K14491 aprc:113866677 409.068