Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g04038 ATGTCTGCGGACAAAAGAAAGTGTGTCAGGTCCAACAGCTTGAAAAATGGTGCAGCACTTTATATTCTGAAACCCTTTTGTGGAGATGACTTCAAAGACATTTGGAAGTATGCAGCGGCTGCAAGGAAAGGGAAACTAGTGATTGAAAATGAATTGAGAAGCAGAGAAGCATCATCATCAACTGAACCTAAGAGAAAAAGAAAGCACGGCAAGGGAAAGAGTAAAAAGGAAGACCAAAGTGAAGGAAGGTCTCAGGTTGCAAAGAAACCAAAGTTGGTCTGGACAACATACCTTCAAAATCTTTTTCTGCTTGCCATAAGACAAATTGGATTGGATAGGGCTGTGCCAAAGAAAATTCTCGAGATCATGAATGTACCATACTTGACAAGAGAAAATGTTGCCAGTCACTTACAGAAGTATAGAAACTTCCTGAAAAAAGTTGCAGACAGAGGAATAATGGAGGGCTTATCTGAAAGCACTCTAAGGTCAAGGTTTGCTTCTAGTCTTCCAGCAACGGTGATCCAACACATCCAAACAAGAGCTGAGCAACTGCGTGTTCCTCTGCAGCAATATTTGAAAAGATTGTCATATCAAGCAGGAAACAGAACAATAACCTCTACTCTTAATCCTTTCAACTATTGTCCAATGAGTCTTTCTGATCAACAAGTTTCAAGCAACAACTATGTGACTACTCAACTTGGGACAAGTCAATTACCCTATCCATTGCACAATGGCCTGATGTTTCAAAACCAGCATGGTAGTTCTTTGAATCAAGTCAGACTTGGACAATCAAGCTTTGGAAGCCATAATATTGGGACTAATAATATTATTGGACAATCAAGCTATGCAAACCCACCATATCAAGCAAATAGCTCATACAGTTCTGGTGCTATCTATCCACCATATGGAGGTGGACATGGTTTGATGACATCTGCTAATGGCCTAATAGGAGGTTACCAAAACTATGGTTCACTGGGAAATCACAACTCTAGATATGATCCAGGAAACTGGAACATGGGAAATTTGAGCAGCTCTAATGTCCTGCCTCAGACTTCTACTTATTATAACTCTGGAATTCAACAGAATGATGGATCACAAATGGTAGGGACTGGGATAAAAGGAGGGATTAACAATGTTGGTACTGCAAACAACAATAGCCTTGACTTTAACAATGTTGATACTGCAAACAACAATAGCTTTGGCTTTAACAATGTTGGTAATGCAAACAATGGCTTTGGCTTCATCAATGGGACACAAAATGCAAACATGAATGTGGCATCCTTGAGGAATGGAGATTTTGGTTTGGTTGAAGGACAGTTTGCTTTTCCTTCCTCTGCTTCTAATATTGGGGATGTGTGTGCAAGTGAGCTTCCACCACCAACATTGATCACTGATGGAACACTAGAAGAAAATGTTTCAGGGCTCCCACCATTGCCTCAGCAACTAGATGACATTGTTGTAGAAAATGAGCATCAGAATAATAATGTCACTTCAATCAGTGAGAGTGAGGCCAGCCAACTGAACTATGACCTTTCTGACATTTTCTTGATGCTAGATGAAATGGATCTTCTTAATGAGGTAAGTTGGCATCGGAAAAATTTATTATAA 1608 0.3986 MSADKRKCVRSNSLKNGAALYILKPFCGDDFKDIWKYAAAARKGKLVIENELRSREASSSTEPKRKRKHGKGKSKKEDQSEGRSQVAKKPKLVWTTYLQNLFLLAIRQIGLDRAVPKKILEIMNVPYLTRENVASHLQKYRNFLKKVADRGIMEGLSESTLRSRFASSLPATVIQHIQTRAEQLRVPLQQYLKRLSYQAGNRTITSTLNPFNYCPMSLSDQQVSSNNYVTTQLGTSQLPYPLHNGLMFQNQHGSSLNQVRLGQSSFGSHNIGTNNIIGQSSYANPPYQANSSYSSGAIYPPYGGGHGLMTSANGLIGGYQNYGSLGNHNSRYDPGNWNMGNLSSSNVLPQTSTYYNSGIQQNDGSQMVGTGIKGGINNVGTANNNSLDFNNVDTANNNSFGFNNVGNANNGFGFINGTQNANMNVASLRNGDFGLVEGQFAFPSSASNIGDVCASELPPPTLITDGTLEENVSGLPPLPQQLDDIVVENEHQNNNVTSISESEASQLNYDLSDIFLMLDEMDLLNEVSWHRKNLL. 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g04038 535 FunFam Two-component response regulator 85 148 - -
Seca10g04038 535 NCBIfam myb-like DNA-binding domain, SHAQKYF class 89 143 IPR006447 GO:0003677
Seca10g04038 535 Gene3D - 86 148 - -
Seca10g04038 535 SUPERFAMILY Homeodomain-like 87 146 IPR009057 -
Seca10g04038 535 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 55 419 IPR044841 GO:0003700|GO:0006355
Seca10g04038 535 MobiDBLite consensus disorder prediction 52 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g04038 Seca-Chr10 87490004 87492613 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g04038 1 165 Response Regulator Gene Family AT5G07210 39.806 2.67e-30 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Seca10g04038 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g04038 - K14491 aprc:113866677 456.447