Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g04037 ATGGTTTCTCAACATCTCACTCACAGACACACTCTCCGTGTTCCCTTTTCTCCTTTAAAACCCAACCATGCTTCCCTATATTTAATACTCCTTATATACTCTCTAACACCAAAATCACCCATCACTCACACCATAACATACAAAGCCTATATATACATAAATTCACTTCCCACTTTCCATTTCAAGAAAACCCTCTTATCCACTCTCTATTCCATTCACTGCTTCACTCTCTTCCACAACTGCAAACACACACACACACATATGTTTACCATCAACCACTCTTCCAAACCACGCCTCATTTCCACAGAACCTTCTTCTTCTTCCATGGACACGTCATCACCGGTGTCAGAGAGCTCTCCGAGGGCGATATTTTCCTACGAGGAGTTGCTGCTGGCGGCGAGCCACCCAAAGAAGCGTGCAGGGAGGAAGAAGTTCAGGGAGACTCGCCACCCAGTGTATAGGGGTGTGAGGAGGAGGAACTCCAATAAATGGGTGTGTGAAATGAGAGAGCCCAATAAGAAGACCAGGATTTGGCTAGGGACTTTTCCAACGCCAGAAATGGCGGCGCGGGCTCATGATGTGGCCGCGATGGCGCTGAGAGGCCGCTACGCCTGTCTTAATTTTGCCGACTCGGCATGGCGGCTCCCCATTCCCGCCACCGCCGACCCCAAGGATATACAAAAGGCAGCTGCAGAGGCTGCTGAAACTTTCAAGCCAAGTCTGACTTTAAATACTAATGACACAAGCCATGATAGTGTCCCTCCACCGCCGGCAGTGGCGGCGGAGGAACAAAGTGTGTTCTTTATGGAGGAGGAGTTGGGGATGCCGGAGTTGTTGAGGAATATGGTGCTTATGTCCCCAACACATTGTTTGGGGTATGAGTATGAAGATGCTGACTTGGACGTTCAGGATGCTGAGGTGTCACTATGGAGTTTTTCAATTTAA 945 0.4878 MVSQHLTHRHTLRVPFSPLKPNHASLYLILLIYSLTPKSPITHTITYKAYIYINSLPTFHFKKTLLSTLYSIHCFTLFHNCKHTHTHMFTINHSSKPRLISTEPSSSSMDTSSPVSESSPRAIFSYEELLLAASHPKKRAGRKKFRETRHPVYRGVRRRNSNKWVCEMREPNKKTRIWLGTFPTPEMAARAHDVAAMALRGRYACLNFADSAWRLPIPATADPKDIQKAAAEAAETFKPSLTLNTNDTSHDSVPPPPAVAAEEQSVFFMEEELGMPELLRNMVLMSPTHCLGYEYEDADLDVQDAEVSLWSFSI. 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g04037 314 Pfam AP2 domain 151 201 IPR001471 GO:0003700|GO:0006355
Seca10g04037 314 CDD AP2 153 211 IPR001471 GO:0003700|GO:0006355
Seca10g04037 314 FunFam Ethylene-responsive transcription factor 2 151 210 - -
Seca10g04037 314 Gene3D AP2/ERF domain 152 210 IPR036955 GO:0003700|GO:0006355
Seca10g04037 314 ProSiteProfiles AP2/ERF domain profile. 152 209 IPR001471 GO:0003700|GO:0006355
Seca10g04037 314 SUPERFAMILY DNA-binding domain 152 211 IPR016177 GO:0003677
Seca10g04037 314 SMART rav1_2 152 215 IPR001471 GO:0003700|GO:0006355
Seca10g04037 314 PRINTS Ethylene responsive element binding protein signature 153 164 IPR001471 GO:0003700|GO:0006355
Seca10g04037 314 PRINTS Ethylene responsive element binding protein signature 175 191 IPR001471 GO:0003700|GO:0006355
Seca10g04037 314 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 106 312 IPR045277 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g04037 Seca-Chr10 87373692 87374636 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g04037 99 312 AP2-EREBP Transcription Factor Family AT5G51990 56.277 8.79e-70 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca10g04037 AP2 3.5e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g04037 - - gmx:547622 320.472
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g04037 10 87373692 87374636 Seca10g04037 10 87373692 87374636 ECH