Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g04031 ATGGGAAAAGCACCATGTTGTGATAAACATGAAGTGAGGAGGGGAGCTTGGACTCCTGAAGAAGATGAAGCATTAGTTGAGTACATTAGCAAGCATGGTCATGGAAGTTGGAGAACACTCCCCAAGCAAGCAGGTCTCCTTAGATGTGGAAAAAGTTGCAGGCTTCGATGGATAAATTATCTTCGCCCTGACATAAAGCGTGGACCATTTACTACTGAGGAAGAAAATACAATTATTCAGCTTCATGCCATGCTTGGCAACAGGTGGGCTGCTATAGCATCCCAACTTCCAGGAAGAACAGACAATGAAATAAAGAACTATTGGAATACACAATTGAAGAAGCGCCTCCCTCGGTTGGGACATTCTCTAGGGACACAACACCACTCTTTCAGTCCTGATCACAGTGTTGCCAAATCTGAATGTCCTTCAACACGCCACATGGTGCAATGGGAAAGTGCTAGAGTTGAGGCAGAGGCAAGGCTATCAATGGAATCAGCAATGCTTAATTCATTGTCAACAAGTGAAACATACCCTGATTACTTTCTTCAACTTTGGCATTCTGAGGTTGGAAAATCATTTCGCATGATCAAAGGAAAAGGAGTAGTGTGTCAAAGTGCTGTCTCACAAGCCTCATCATCATCAAAATTGGAGTCATGTTCAGATGTCTCATTGCAGGTTAAAAACACTGGAAGCAGTGCCTTTGCAAACAAGAAACAAGAAAAACTAGATTGTAGCTATAAACCAAAGCTTGAAGATGGCACAATTGGGTCAGAGTCTGGCTACTATGAATTTCTTGATATTTCTGATTCTGCATTAAATCACCTGCTAGATATGCCTGAGGGAGAAATAGGATTTTTAGGACAGAATGACAGTTTCCTCAATACCCTTTAG 891 0.4198 MGKAPCCDKHEVRRGAWTPEEDEALVEYISKHGHGSWRTLPKQAGLLRCGKSCRLRWINYLRPDIKRGPFTTEEENTIIQLHAMLGNRWAAIASQLPGRTDNEIKNYWNTQLKKRLPRLGHSLGTQHHSFSPDHSVAKSECPSTRHMVQWESARVEAEARLSMESAMLNSLSTSETYPDYFLQLWHSEVGKSFRMIKGKGVVCQSAVSQASSSSKLESCSDVSLQVKNTGSSAFANKKQEKLDCSYKPKLEDGTIGSESGYYEFLDISDSALNHLLDMPEGEIGFLGQNDSFLNTL. 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g04031 296 FunFam Myb transcription factor 11 67 - -
Seca10g04031 296 CDD SANT 16 61 IPR001005 -
Seca10g04031 296 CDD SANT 69 110 IPR001005 -
Seca10g04031 296 FunFam MYB transcription factor 69 116 - -
Seca10g04031 296 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Seca10g04031 296 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Seca10g04031 296 Gene3D - 69 116 - -
Seca10g04031 296 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Seca10g04031 296 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Seca10g04031 296 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 223 - -
Seca10g04031 296 SMART sant 66 114 IPR001005 -
Seca10g04031 296 SMART sant 13 63 IPR001005 -
Seca10g04031 296 Gene3D - 14 66 - -
Seca10g04031 296 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Seca10g04031 296 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Seca10g04031 296 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g04031 Seca-Chr10 87106123 87110676 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g04031 1 292 MYB Transcription Factor Family AT3G61250 50.804 7.82e-95 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca10g04031 Myb_DNA-binding 1.8e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g04031 K09422 - gmx:100782075 430.254