Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g03978 ATGGCTATGGTTTCTGTTGCTTTCCACAAGATCAATAGTATCTGTGAGAGGAGGCAAAATTGGCGTTTGAGAGTTAAGCTGGTTAGGGTATGGAATATGTGTGCTGTTGCTACCCCAAGTGACCCATACGCAATGCAGATGGTATTTGTAGATGAAGAGGGAGGGAAGATAGAGGCTATAGTTCAGAGGCAATTTATGAAGAAATTTTCACAGTGCCTGGTGGAGGGAGAGGTGTACAAGATATCCAACTTTGGTGTCTCTTCTAATGGAGGCAAGTTTAGGGCTTCTGGTCATGACTACAAGCTGTCTTTCACAGCATGTACTCAAGTGACAAAGTGCGTTGGAGTATCTATACCTGGGTTAGGGCTCTCTCTTTTGAAGACATCTGATCTAAAGAAAACGAGGGGCCATTCGGTCTACCTTGTGGATTTTATGGGAGTGGTAACTGTTGTCTCAGAGGAGCTTAATATCAACAAGGAGGGAAGGAAGACACGTTTAATGTTGATTGACTTAGTTGACGAATTTGGTAAGATCCGCTTTGCTGTGTTTGGGGATCTCATTAATGTTGTTATGGAGTTCCTTGCTCTTGTAGATCATGGGTTTCCTGTTGTTATAATCCAATTCGCAAGGGTAAACCTCTATAAAGGTGAGGTTGGGATTCAAAATGTAATGAATGCAACAAAGATTTTGTGGAATCCTCATATTCCATTGGCAGTGGAATTTAAAAATAGCCTAGCTGTCCATGAAATTGAAACTGACGTTTCTATCTCAACTATCACTGATCGGCGCCAAGCTCCATCCATGAGGGATGAGTTTCTTAAACTATATCCCAAGAAATCCATTGGGCAACTTTATGATATGCTTGAGGAAGGTCACTACATAATATTAGCCACAGTGAGTGAGATTGTTGATGACTTCAAGTGGTGGTACATGGCATGTTCCTGCATGAAAGGTGTCTCTTTTGTTGAAGGACTCCCATTTTGTGAAGATTGTAACAGATATGTTTTTGATATGACCCCAAGGTACAAAGTCAAGCTGTTGGTGTGTGATGGGAATGATAATGCATTTTTCATTCTTTGGGATTTAGACTGTTATTATCTTGTGAATAAAACCTGCCGACATATGCTGGATGATATTGAGGGTCAGCCTAAGGGGTTTTTACCTGAAGAAATTAGGAACTTAGTGGGGAAGGAGATGCTTTTTCGAATAGAAAATAGCCACGAAGATTTGCTTAGCTTTTCTGACACTTATAAGATTAAGAAGGTGTGCTGTGATGTGGATATATTTGCTCAATATAAAGAAGAAGTTGCTGATGAAACTCCCCTAAAGTTGAATTTCGCTCCTGCATTCCCCAAGTTAGCCGAGGCGGATGCAAATGGTGAAGGGCTTGAACTGTCCACCTGCTGCAAAACTATTGCAGCTGAGCTTGAGATCACCTCTCCCTCATGTGTTACTTCTTCAGCCAATGGGGAGGAAAGTGGGAGCCTTGGTAAAAGGGATGTTGAGGACCAAGATGAAGCTCCCCTAAAGAGGAAGAAGAGGTCCAGGGTTCGAGCAGTTAAGGACCTATCTCCATACTCTGAACCATGGTTCATAGAAGTGAAGGTATTTAGGATTTGGACAACACCTACATGTAGCAATGCTTCCCGTGTGAACACTGTGGAGATGGTCTTCATTGATGCTGAGGGAACTAAGATCCAAGGATCTGTCACAAGGGATATCTTAAGGCAGAAGCGGCTGGACATGGATGAAGGTGGCTGTTATGAAGTAAATGAAGCACTGGTCGTTCCAAATGAGGGAAACGACAGACCTACTCAACATTCTTATAGATTGGTACTCCAAGGCAGGTCTTTAATCAAGAAAATAAAGCCCCTTTGCTTTAATGCTCTTGGCCTCTCCCTTATGACTTCAGCTGCTCTTGCAGCTTAG 1929 0.4246 MAMVSVAFHKINSICERRQNWRLRVKLVRVWNMCAVATPSDPYAMQMVFVDEEGGKIEAIVQRQFMKKFSQCLVEGEVYKISNFGVSSNGGKFRASGHDYKLSFTACTQVTKCVGVSIPGLGLSLLKTSDLKKTRGHSVYLVDFMGVVTVVSEELNINKEGRKTRLMLIDLVDEFGKIRFAVFGDLINVVMEFLALVDHGFPVVIIQFARVNLYKGEVGIQNVMNATKILWNPHIPLAVEFKNSLAVHEIETDVSISTITDRRQAPSMRDEFLKLYPKKSIGQLYDMLEEGHYIILATVSEIVDDFKWWYMACSCMKGVSFVEGLPFCEDCNRYVFDMTPRYKVKLLVCDGNDNAFFILWDLDCYYLVNKTCRHMLDDIEGQPKGFLPEEIRNLVGKEMLFRIENSHEDLLSFSDTYKIKKVCCDVDIFAQYKEEVADETPLKLNFAPAFPKLAEADANGEGLELSTCCKTIAAELEITSPSCVTSSANGEESGSLGKRDVEDQDEAPLKRKKRSRVRAVKDLSPYSEPWFIEVKVFRIWTTPTCSNASRVNTVEMVFIDAEGTKIQGSVTRDILRQKRLDMDEGGCYEVNEALVVPNEGNDRPTQHSYRLVLQGRSLIKKIKPLCFNALGLSLMTSAALAA. 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g03978 642 PANTHER OS03G0429900 PROTEIN 9 408 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Seca10g03978 642 SUPERFAMILY Nucleic acid-binding proteins 125 248 IPR012340 -
Seca10g03978 642 SUPERFAMILY Nucleic acid-binding proteins 7 116 IPR012340 -
Seca10g03978 642 Gene3D - 117 254 IPR012340 -
Seca10g03978 642 MobiDBLite consensus disorder prediction 483 514 - -
Seca10g03978 642 Gene3D - 268 436 IPR012340 -
Seca10g03978 642 MobiDBLite consensus disorder prediction 495 512 - -
Seca10g03978 642 SUPERFAMILY Nucleic acid-binding proteins 519 621 IPR012340 -
Seca10g03978 642 SUPERFAMILY Nucleic acid-binding proteins 276 421 IPR012340 -
Seca10g03978 642 CDD RPA1_DBD_B_like 143 245 - -
Seca10g03978 642 Gene3D - 515 621 IPR012340 -
Seca10g03978 642 Gene3D - 7 113 IPR012340 -
Seca10g03978 642 CDD RPA1_DBD_C 293 445 IPR047192 -
Seca10g03978 642 Pfam Domain of unknown function DUF223 47 114 IPR003871 -
Seca10g03978 642 CDD RPA1_DBD_A_like 22 110 - -
Seca10g03978 642 Pfam Replication factor-A C terminal domain 294 427 IPR013955 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g03978 Seca-Chr10 85424532 85429203 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g03978 1 412 Core DNA Replication Machinery Family AT5G08020 22.864 4.08e-13 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g03978 - - lja:Lj6g3v0884310.1 354.755