Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g03960 ATGACACAAGCTCTTCGCTACTTCAAAGAGTTGACAGAACAGAATGTTCTTGCTCAGGTTTGGGCACCTGTGAGGAATGGAAATAGATATAAACTCACAACTTCAGGTCAACCTTTTGTTCTTGATCCACACAGTAATGGACTCCATCAGTATAGAACAGTTTCCTTGATGTATATGTTTTCTGTGGATGGTGAAAATGATGAAATTCTGGGACTTCCAGGTAGAGTTTTTCAGCAGAAATTGCCAGAATGGACTCCTAATGTTCAGTATTACTCTAGTAAAGAGTATTCACGCCTAAATCATGCTCAACATTACAATGTTCGTGGAACCTTGGCTTTGCCTGTGTTTGAACCTCCAGGCCAATCTTGTGTTGCTGTGCTGGAGTTGATAATGACTTCACAGAAGATTAACTATGCTCCTGAGGTTGATAAAGTCTGCAAAGCCCTTGAGGCAGTAAATTTGAGGAGTTCAGAAATTTTGGAGCATCCATACAGTCAGATTTGTAATGAAGATCGCCAGAATGCATTAGCAGAGATTTTGGAGATATTGACAGTTGTCTGTGAAACTCATAATTTACCTTTGGCACAAACATGGGTTCCCTGTAGGCATAGGAGTGTTTTGGCTCATGGTGGTGGTCTTAAGAAAAGTTGCTCTAGTTTTGATGGTTATTGCATGGGGCAAGTTTGTATGTCTATAACTGAGGTAGCATTCTATGTCATAGATGCTCATACATGGGGTTTCCATGAGGCCTGTGTTGAGCATCACTTACAACAAGGTCAAGGGGTTGCAGGGAGGGCATTTATGTCCCACAACATGTGCTTTTGTGGAAACATTACTCAATTCTGCAAAACTGATTATCCCTTAGTACATTATGCTCTTATGTTTGGGTTGACAAGCTGTTTTGCAATCTGTTTACAAAGCTCTCATACTGGAAATGATGATTATGTATTAGAGTTTTTCCTGCCTCCTCAGATCACAGACTTTAATGAACAAAAATCTTTGTTGGGATCCATATTGGCAACAATGAAGCACCATTTCCAGAGTCTTAAGGTTGCTTCTGGTGTTGAACTTGAGGAGGATGGTTCAATTGAAATTATAGAAACAATAAATGGAAGGGCTCATTTGAGCCTTGAATCTATTCCAATTACCTCATCTGCTAAATCACCACCTAGACATGATGCCTCACCAAATATAGGGGAGGGGGTCCCACTAGATCCATCAGAACAGCAATTAATGACATACTTTGATGACATAAATGATGGAGGGAATCTTGGTGATAATGCAGGTGGAAGCATAGATAAGATCTCTTCCTTAGAGACCAAAATCATAAAGCAACCATCACAGAGAAAACGCGGAAAAGCTGAGAAATCAATCAGTCTTGAAGTTCTGCAACAGTATTTCAGTGGGAGTCTTAAGGATGCTGCAAAGAGCCTTGGTGTTTGTCCTACTACAATGAAGCGCATCTGTAGGCAGCATGGGATATCCCGTTGGCCATCTCGAAAGATCAAAAAGGTTAACCGTTCCCTGTCCAAGCTCAAGTGTGTAATTGAATCAGTTCATGGTGCTGAAGGAGCATTTGGTTTGAATTCCCCAAGTACTAGTTCATTTCCCATTGCTGTTGGTTCCTTCACTGAACCATCTACTTCAAACAAGTTTGACCACCAAGCCTCATTAAGCATTGGACCATCAGAACCTAATATGAATGAAAATGATTTGGATGCTTCTAAAGTATCAGCAAAGAGCAGACAGGATGGAATTGAAGATCAATTTCTAGGAGCAAGGACACAAAGTCCTGAGAAAGTGATCAATGACAAAGGTGGATCCACTCAGGAGGTTGGCACTAAAGGCTCAAACAAGTTTAGGATTGGGAGTGGCTCAAGTGAAGGCAGTGCAAATCCTACTCCTCATGGCAGCCCCCCAAATGAAAGTTCTCCTCCAAAAGATATATTTAATATAACATGCAACAGTGAGCAATATTTTGTGTTAAGGGGATCACTGGAGCCAACACTGCAGCCAACTAGTACCTTGAACAGTGCAACTGCATACCCTATGCCTAATGTTGTGGTGACAGAACCTCAAGAACCATTTGGAGGATTGCTAATTGAGGGTGCTGATAGTTCTAAAGACTTGAGAAATCTGTGTTTTTCAGCAGATGCTGTTTTGGAGGATCAGGTTCCAGATGCTTGTGGGATTAATCCTCCATGTTCTGAATTGGCTCCTATCCAACACATGGATACTCTTAATAACACTATGACACCTTTTGCAGCAAGGAAAGAGATGAAGACTGTGACTATTAAAGCAACATATAGAGAAGATATCATAAGGTTTAGGGTCTCTGAGAACTGTGGCATTGTGGAACTAAAAGAAGAGATTGCCAAAAGATTGAAACTTGAGGTGGGTACATTTGATATCAAGTATCTGGATGATGATCATGAATGGATTTTGGTAGCCTGTGATGTAGACCTGCAAGAGTGCATGGACGTTTTAAGATCATCAGGCAGCAACATTATAAGGCTTGTGGTGCATGATGTAGTGTCCATTCTGGGAAGCTCTTGTGAGAGCTCTGGGGAGTGA 2574 0.4122 MTQALRYFKELTEQNVLAQVWAPVRNGNRYKLTTSGQPFVLDPHSNGLHQYRTVSLMYMFSVDGENDEILGLPGRVFQQKLPEWTPNVQYYSSKEYSRLNHAQHYNVRGTLALPVFEPPGQSCVAVLELIMTSQKINYAPEVDKVCKALEAVNLRSSEILEHPYSQICNEDRQNALAEILEILTVVCETHNLPLAQTWVPCRHRSVLAHGGGLKKSCSSFDGYCMGQVCMSITEVAFYVIDAHTWGFHEACVEHHLQQGQGVAGRAFMSHNMCFCGNITQFCKTDYPLVHYALMFGLTSCFAICLQSSHTGNDDYVLEFFLPPQITDFNEQKSLLGSILATMKHHFQSLKVASGVELEEDGSIEIIETINGRAHLSLESIPITSSAKSPPRHDASPNIGEGVPLDPSEQQLMTYFDDINDGGNLGDNAGGSIDKISSLETKIIKQPSQRKRGKAEKSISLEVLQQYFSGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKIKKVNRSLSKLKCVIESVHGAEGAFGLNSPSTSSFPIAVGSFTEPSTSNKFDHQASLSIGPSEPNMNENDLDASKVSAKSRQDGIEDQFLGARTQSPEKVINDKGGSTQEVGTKGSNKFRIGSGSSEGSANPTPHGSPPNESSPPKDIFNITCNSEQYFVLRGSLEPTLQPTSTLNSATAYPMPNVVVTEPQEPFGGLLIEGADSSKDLRNLCFSADAVLEDQVPDACGINPPCSELAPIQHMDTLNNTMTPFAARKEMKTVTIKATYREDIIRFRVSENCGIVELKEEIAKRLKLEVGTFDIKYLDDDHEWILVACDVDLQECMDVLRSSGSNIIRLVVHDVVSILGSSCESSGE. 858
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g03960 857 Gene3D - 759 843 - -
Seca10g03960 857 SMART PB1_new 762 844 IPR000270 GO:0005515
Seca10g03960 857 SUPERFAMILY CAD & PB1 domains 759 847 - -
Seca10g03960 857 Pfam RWP-RK domain 457 505 IPR003035 -
Seca10g03960 857 MobiDBLite consensus disorder prediction 383 403 - -
Seca10g03960 857 ProSiteProfiles RWP-RK domain profile. 444 525 IPR003035 -
Seca10g03960 857 MobiDBLite consensus disorder prediction 547 574 - -
Seca10g03960 857 MobiDBLite consensus disorder prediction 547 650 - -
Seca10g03960 857 ProSiteProfiles PB1 domain profile. 762 844 IPR000270 GO:0005515
Seca10g03960 857 PANTHER PROTEIN NLP8 1 856 IPR045012 GO:0003700
Seca10g03960 857 Pfam PB1 domain 762 843 IPR000270 GO:0005515
Seca10g03960 857 CDD PB1_NLP 763 843 IPR034891 -
Seca10g03960 857 MobiDBLite consensus disorder prediction 601 637 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g03960 Seca-Chr10 84438671 84444973 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g03960 131 857 NLP Transcription Factor Family AT4G24020 52.717 0.0 676
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Seca10g03960 PB1 4.5e-19 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g03960 - - gmx:100780901 1419.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g03960 10 84438671 84444973 Seca10g03960 10 84438671 84444973 PCT