Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g03953 ATGGCTCCTAAGCAGCCAAATACCGGTCTTTTTGTTGGATTGAACAAGGGTCACGTTGTCACCAAGAAGGAATTGGCTCCACGACCCTCCGATCGCAAGGGGAAAACAAGCAAACGTGTGCACTTTGTAAGGAACCTCATCCGGGAGGTTGCTGGTTTTGCTCCTTATGAAAAGCGTATAACTGAGTTGCTGAAGGTTGGAAAAGATAAGAGAGCACTGAAAGTTGCCAAGAGAAAGCTTGGAACCCATAAACGTGCAAAGAAGAAGCGTGAGGAGATGTCCAATGTTCTCCGCAAGATGAGGTTGGCTGGTGGAGCCGGTGATAAGAAGAAGTAA 336 0.4732 MAPKQPNTGLFVGLNKGHVVTKKELAPRPSDRKGKTSKRVHFVRNLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVLRKMRLAGGAGDKKK. 112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g03953 111 Coils Coil 83 103 - -
Seca10g03953 111 MobiDBLite consensus disorder prediction 79 111 - -
Seca10g03953 111 Pfam Ribosomal protein L36e 8 101 IPR000509 GO:0003735|GO:0005840|GO:0006412
Seca10g03953 111 FunFam 60S ribosomal protein L36 1 106 - -
Seca10g03953 111 PANTHER 60S RIBOSOMAL PROTEIN L36 1 109 IPR000509 GO:0003735|GO:0005840|GO:0006412
Seca10g03953 111 MobiDBLite consensus disorder prediction 87 111 - -
Seca10g03953 111 Gene3D 60S ribosomal protein L36 1 106 IPR038097 -
Seca10g03953 111 ProSitePatterns Ribosomal protein L36e signature. 55 65 IPR000509 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g03953 Seca-Chr10 84332741 84334527 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g03953 1 111 Cytoplasmic Ribosomal Protein Gene Family AT3G53740 80.180 6.30e-58 172
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g03953 K02920 - zju:107414508 213.772