Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g03947 ATGCGAAGCTCAAACACTCAAAACCCTAGTTCTTCCACAAGCAACAACAGGGAAATGGCTCCTAAGCAGCCAAATACGGGTCTTTTTGTTGGATTGAACAAGGGTCACGTTGTCACCAAGAAGGAATTGGCTCCACGACCCTCCGATCGCAAGGGGAAAACAAGCAAACGTGTGCACTTTGTAAGGAACCTCATCCGGGAGGTTGCTGGTTTTGCTCCTTATGAAAAGCGTATAACTGAGTTGCTGAAGGTTGGAAAAGATAAGAGAGCACTGAAAGTTGCCAAGAGAAAGCTTGGAACCCATAAACGTGCAAAGAAGAAGCGTGAGGAGATGTCCAATGTTCTCCGCAAGATGAGGTTGGCTGGTGGAGCCGGTGATAAGAAGAAGTAA 390 0.4692 MRSSNTQNPSSSTSNNREMAPKQPNTGLFVGLNKGHVVTKKELAPRPSDRKGKTSKRVHFVRNLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVLRKMRLAGGAGDKKK. 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g03947 129 MobiDBLite consensus disorder prediction 97 129 - -
Seca10g03947 129 Coils Coil 101 121 - -
Seca10g03947 129 MobiDBLite consensus disorder prediction 1 22 - -
Seca10g03947 129 FunFam 60S ribosomal protein L36 19 124 - -
Seca10g03947 129 MobiDBLite consensus disorder prediction 105 129 - -
Seca10g03947 129 PANTHER 60S RIBOSOMAL PROTEIN L36 12 127 IPR000509 GO:0003735|GO:0005840|GO:0006412
Seca10g03947 129 ProSitePatterns Ribosomal protein L36e signature. 73 83 IPR000509 GO:0003735|GO:0005840|GO:0006412
Seca10g03947 129 Gene3D 60S ribosomal protein L36 17 124 IPR038097 -
Seca10g03947 129 Pfam Ribosomal protein L36e 26 119 IPR000509 GO:0003735|GO:0005840|GO:0006412
Seca10g03947 129 MobiDBLite consensus disorder prediction 1 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g03947 Seca-Chr10 84291836 84293620 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g03947 19 129 Cytoplasmic Ribosomal Protein Gene Family AT3G53740 80.180 4.00e-58 174
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g03947 K02920 - zju:107414508 213.772
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g03947 10 84291836 84293620 Seca10g03947 10 84291836 84293620 ECH