Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g03938 ATGCCAGTTGCAAAATCGAAGGCTTCTGGCACTACAGATGTCATGAAAACAGAAGACAAAATAGATACTATAATCAAACAAGCAGTTGGTAGAGAATCTTTGCTTTATTTTCCAAGGGCCAGTGAAAGCTCTATACAGTGGATTCCATTCCTCCATACTTTAGATCAGCATGGTGTTTGCAATTCTTATTCAGAATTTCCAGGATGGCCTTTGCTCTTTCCTTTGAAGGTTCAGTTGCAGAAGTGTGAGAAGTGTCCTCAAGAGTTTTGCTCCTCCATTAATTATAGAAGGCATACACGTATCCACCACCGGTTCAGAAAGCTTGATAAGGATTCTACAAAAACTAGGGATCTTTTAGGAGCATATTGGGATAAGCTCTCTCTAGAAGAGGCAAAGGAAGTTGTATCATTCGAAAATGTGGTGCTGGAGGTAAAATCTTGTTGCTCCTTACATGTACAAGTTATTTGA 468 0.3953 MPVAKSKASGTTDVMKTEDKIDTIIKQAVGRESLLYFPRASESSIQWIPFLHTLDQHGVCNSYSEFPGWPLLFPLKVQLQKCEKCPQEFCSSINYRRHTRIHHRFRKLDKDSTKTRDLLGAYWDKLSLEEAKEVVSFENVVLEVKSCCSLHVQVI. 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g03938 155 ProSitePatterns Zinc finger C2H2 type domain signature. 82 103 IPR013087 -
Seca10g03938 155 ProSiteProfiles Zinc finger C2H2 type domain profile. 80 107 IPR013087 -
Seca10g03938 155 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g03938 Seca-Chr10 83756896 83761414 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g03938 19 143 C2H2 Transcription Factor Family AT4G25610 50.400 1.19e-40 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca10g03938 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g03938 - - gmx:100809067 233.417
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g03938 10 83756896 83761414 Seca10g03938 10 83756896 83761414 ECH
Seca10g03938 10 83756896 83761414 Seca10g03938 10 83756896 83761414 PCT