Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g03933 ATGCCTTCATGGTGGGGGAAATCATCATCAAAAGAAACCAAGAAGAAAGCAAGTAAGGAAAGTTTTATAGACACATTACACCGAAAATTTAAAATCCCATCTGAGGCTAAACTAAGCAGTAGATCTGGAGTATCTGGTAGACATTGCAATGACACAATTTCAGAGATGGGGGCACGGTCTCCTTCTGATTCAAGATCTCCTTCGCCTTCCAAAGTGGCAAGGTGTCAAAGTTTTGCCGAAAGGCCTCGTGCTCAGCCACTACCTCTTCCTGGTCTGCACCCATCAACTATAAGCCGAGCAGATTCTGAAATTAGCATATCATCTAAATCAAGACTTGAAAAGGGCTCCAAGCCATCATTGTTTCTGCCGCTGCCAAAACCTGCATGCATGCGTGGTAGGCTGAACCCTGCAGATTTGGATGGAGATCTGGTCACTGCTTCAGTCTCTAGTGAGAGCTCTGCTGATAGTGATGAACCAGTAGACTCTAGCAATCGCAGTCCTCTAGCAACTGACTCTGAGGCTGGGACCAGAACTGCTGCAGGCAGTCCTTCCAGCTTAATGCTCAGGGATCAATCATCTACTGTTTTCCAAGTAAATTCAAGGGAAGTCAAAAAGCCAGCAAACATTCTGGGTAATCATATGTCTTCTACTTCACCAAAACGGAGGCCTCTAAGCAACCATGTTTCAAATCTGCAGATTCCTCCTCATGGTGCCTTCTATAGTGCTCCTGACAGTTCCAGATCTAGTCCATCAAGAAGCCCTTTGAGAGCATTTGGCACAGAACAGGTGTTGAATTCTGCTTTTTGGGCTGGAAAGCCATATTCAGAGGTAAATTTAGTTGGATCTGGGAACTGCTCAAGTCCAGGTTCTGGTCACAATTCTGGCCACAATTCAATGGGAGGAGACATGTCAGGACAATTATTTTGGCAACCAAGCAGGGGTAGCCCCGAGTATTCTCCTGTACCAAGTCCCAGAATGACAAGCCCTGGTCCAAGCTCTAGGATTCAAAGTGGAGCTGTTACACCTATTCATCCCAGAGCTGGGGGAACACCTATTGCTGAGTCACAAACAGGATGGGTCGATGATGGAAAGCAACAGAGTCATCGTTTGCCCCTTCCTCCTTTAGCAGTCACCAATCCCTTGCCTTTCTCTCATTCAAATTCTGCAGCAACATCTCCATCTTTTCCAAGAAGTCCAGGAAGAGCAGATAACCCAATGAGCCCCGGCTCGCGTTGGAAAAAGGGAAAGCTGCTTGGCAGGGGCACATTTGGTCATGTCTATGTTGGCTTCAATAAGGAAAGTGGTGAAATGTGTGCAATGAAAGAGGTAACTCTATTTTCAGATGATGCCAAGTCTAAGGAAAGTGCTAAGCAATTAATGCAGGAAATTACCTTGTTAAGCCGTTTACGGCATCCAAATATTGTGCAGTATTACGGTTCTGAAACTGTTGGTGACAAGCTTTACATATACCTTGAGTATGTAGCTGGAGGCTCCATATATAAACTTCTTCAAGAATATGGACAATTTGGTGAACTAGCTATTCGTAGTTATACTCAACAAATTTTGTCAGGACTTGCTTATTTACATGCTAAACATACTGTCCACAGGGACATTAAAGGAGCAAATATACTAGTCGATACTAATGGACGGGTCAAGTTGGCAGACTTTGGCATGGCAAAGCATGTAAGCTTGGAGAACAAAACAATCCATACTTATAACTTGCATATTTTGCAGATAACGGGGCAATCATGTCCGTTATCATTCAAGGGAAGCCCTTATTGGATGGCCCCTGAGGTTATAAAGAACTCTAATGGGTGCAACCTTGCTGTGGATATATGGAGTCTTGGATGCACAGTTTTGGAAATGGCTACAACTAAGCCTCCTTGGAGTCAGTATGAAGGGGTTGCTGCCATGTTCAAGATTGGTAATAGCAAGGAACTCCCAACAATCCCAGATCATCTCTCTAGTGAAGGAAAGGATTTTGTTCGGAAATGTCTACAACGTAATCCACACCATCGACCTCCAGCCAGTGAATTATTGAACCACCCTTTTGTAAAATGTGCTGCACCTTTAGAAAGACCTATTCCAGGTCCAGAAGCTCCAGACCCTGTATCTGAGATTGCACAAGGAGCAAAAGCCCTGGGCATTGGACAAGGAAGGAATCTTTCTTCGTTGGATTCAGATAGGCTTTCTCTTCATTCTTCTAGGGTTTTGAAAACTAATACTCATGCAAGTGAAATCCATATTCCAAGGTATATCTCTTGCCCTGTCTCTCCCATTGGAAGCCCACTTTTGAGGCCAAGATCACCACAGCATATAAATGGAAGAATGTCTCCCTCTCCAATATCTAGCCCTCGGACTGCTTCTGGTGCTTCTACGCCTCTCAGTGGTGGTAGTGGTGCCATTCCATTTAGTAATCACTTAGTTTACTTTCAAGAGGGTCTTGGAAGCTTGCCAAAATCTGCAAATGGTGTCTACATTAGTGGTCCTGCTCATCTTGACACAAATGTTGACATTTTTCGGGGAATGCAAAAGACATCTCACATTTCATCAGAACTGGTTCCCAGTGAAAATGAAGTTCTGGGGAAGCAGTTTGCAAGGCCTCCTCAAGATGAGCCATATGATGTTCAATCAGTCTTGGCTGATCGTGTTTGCAGGCAGCTGCTGGGGGATCATGTGAAAAGTAACCCATCCCTTGATCTAAGTCCCAACTCCTCTTTGCTCAGCCGGACAAATGGTTTATGA 2745 0.4452 MPSWWGKSSSKETKKKASKESFIDTLHRKFKIPSEAKLSSRSGVSGRHCNDTISEMGARSPSDSRSPSPSKVARCQSFAERPRAQPLPLPGLHPSTISRADSEISISSKSRLEKGSKPSLFLPLPKPACMRGRLNPADLDGDLVTASVSSESSADSDEPVDSSNRSPLATDSEAGTRTAAGSPSSLMLRDQSSTVFQVNSREVKKPANILGNHMSSTSPKRRPLSNHVSNLQIPPHGAFYSAPDSSRSSPSRSPLRAFGTEQVLNSAFWAGKPYSEVNLVGSGNCSSPGSGHNSGHNSMGGDMSGQLFWQPSRGSPEYSPVPSPRMTSPGPSSRIQSGAVTPIHPRAGGTPIAESQTGWVDDGKQQSHRLPLPPLAVTNPLPFSHSNSAATSPSFPRSPGRADNPMSPGSRWKKGKLLGRGTFGHVYVGFNKESGEMCAMKEVTLFSDDAKSKESAKQLMQEITLLSRLRHPNIVQYYGSETVGDKLYIYLEYVAGGSIYKLLQEYGQFGELAIRSYTQQILSGLAYLHAKHTVHRDIKGANILVDTNGRVKLADFGMAKHVSLENKTIHTYNLHILQITGQSCPLSFKGSPYWMAPEVIKNSNGCNLAVDIWSLGCTVLEMATTKPPWSQYEGVAAMFKIGNSKELPTIPDHLSSEGKDFVRKCLQRNPHHRPPASELLNHPFVKCAAPLERPIPGPEAPDPVSEIAQGAKALGIGQGRNLSSLDSDRLSLHSSRVLKTNTHASEIHIPRYISCPVSPIGSPLLRPRSPQHINGRMSPSPISSPRTASGASTPLSGGSGAIPFSNHLVYFQEGLGSLPKSANGVYISGPAHLDTNVDIFRGMQKTSHISSELVPSENEVLGKQFARPPQDEPYDVQSVLADRVCRQLLGDHVKSNPSLDLSPNSSLLSRTNGL. 915
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g03933 914 FunFam Mitogen-activated protein kinase kinase kinase 410 709 - -
Seca10g03933 914 SMART serkin_6 412 685 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g03933 914 Gene3D Transferase(Phosphotransferase) domain 1 410 695 - -
Seca10g03933 914 CDD STKc_MEKK1_plant 411 685 - -
Seca10g03933 914 MobiDBLite consensus disorder prediction 98 114 - -
Seca10g03933 914 MobiDBLite consensus disorder prediction 380 398 - -
Seca10g03933 914 MobiDBLite consensus disorder prediction 895 914 - -
Seca10g03933 914 ProSiteProfiles Protein kinase domain profile. 412 685 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g03933 914 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 59 697 - -
Seca10g03933 914 MobiDBLite consensus disorder prediction 9 35 - -
Seca10g03933 914 SUPERFAMILY Protein kinase-like (PK-like) 410 686 IPR011009 -
Seca10g03933 914 MobiDBLite consensus disorder prediction 286 313 - -
Seca10g03933 914 MobiDBLite consensus disorder prediction 286 414 - -
Seca10g03933 914 MobiDBLite consensus disorder prediction 897 914 - -
Seca10g03933 914 Pfam Protein kinase domain 413 685 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g03933 914 MobiDBLite consensus disorder prediction 773 796 - -
Seca10g03933 914 MobiDBLite consensus disorder prediction 1 230 - -
Seca10g03933 914 MobiDBLite consensus disorder prediction 145 201 - -
Seca10g03933 914 MobiDBLite consensus disorder prediction 210 230 - -
Seca10g03933 914 MobiDBLite consensus disorder prediction 765 796 - -
Seca10g03933 914 ProSitePatterns Protein kinases ATP-binding region signature. 418 441 IPR017441 GO:0005524
Seca10g03933 914 MobiDBLite consensus disorder prediction 38 73 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g03933 Seca-Chr10 83575637 83585875 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g03933 1 912 MAP Kinase Kinase Kinase AT1G63700 58.297 0.0 871
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Seca10g03933 Pkinase 8.2e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g03933 K20717 - gmx:100792783 1511.51