Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g03925 ATGGCAGGTGATCAGGTAGTGAAAAAGGGAGAAACTCTGAGTGTGAAAATCACTGGCAAAAGCCATGTGAAACCTGAGGAGAAGATTGGAAGGAAAGAGTGTCAACTTGTCACTTTTGATCTTCCCTACCTAGCTTTCTACTATAACCAAAAGCTACTTTTTTACAAAGGGGGTGATTTTGAGGATATGGTTAAGAAACTCAAAGATGGGCTTAGTGTAGTCCTGAAAGAGTTCCATCAACTAGCTGGTAAATTAGGGAAAGATGAAGAGGGTGTGTTCAGGGTGGAATATGATGATGACATGCTTGGTGTTGAGGTCATAGAAGCAGTTGCTGATGAGTTTGGTGTAGAAGATCTCACTGTGGCAGAGAGTACCAGCATTTTGAAGGAGCTTATACCTTACAGTGGAATCTTGAATTTGGAAGGCATGCACAGGCCTTTGCTTGCAGTTCAGTTAACTCAGCTCAAAGACGGGCTCGCGATGGGCTTGGCGTTCAACCATGGTGTCCTTGACGGGACTTCCACATGGCACTTTATGAGTTCATGGGCTGAGATCTGCAGCGGTTCACCCTCCACAACAGCCCAACCCTTCCTTGAACGGACCAAAGCCCGAAACACACGTGTGAAGCTTGATCTCTCTCCACCTGACGCATCGAATGGGGAGCCAAAGCCCGAGCCCGTACTCAGGGAAAAGATCTTTAAATTCTCCGAGGCAGCCATCGACAAGATGAAGTCAACAGTCAACGAAATCCTTCCATCGGACGGTTCAAAACCATTCTCAACCTTTCAAGCTCTCTCCAGTCATATTTGGCGTCATGTAACCCATGCACGCGACCTAAAACCTGAAGACTACACCGTTTTCACCGTCTTTGTGGATTGTCGGAAGCGGGTGGACCCACCGATGCCGGAGGCGTATTTTGGAAACCTAATTCAGGGCATATTCACTGTCACGGCGGCCGGGCTTTTGTCAGCCCACCCACCACAATTCGGTGCTTCTTTGATCCAGAAAGCCATTGAGGCACATGATGCAAAAGCTATTGATGGACGTAACAAGGAGTGGGAGAGTGCACCAAAAATTTTTCAGTTCAAAGATGCTGGGGTGAATTGTGTGGCAGTGGGAAGTTCACCAAGGTTTAAGGTTTATGACATTGATTTTGGATGGGGGAAGCCCGAGAATGTGAGGAGTGGGACTAATAATAAGTTTGATGGGATGATTTATTTGTACCCAGGGAAGAGTGGAGGGAGGAGCATTGATGTGGAGCTAACCTTGGAGCCTGAGGCTATGGGGAGGTTGGAGCAAGACAAGGAGTTTCTTATGGAGGTATAA 1326 0.4721 MAGDQVVKKGETLSVKITGKSHVKPEEKIGRKECQLVTFDLPYLAFYYNQKLLFYKGGDFEDMVKKLKDGLSVVLKEFHQLAGKLGKDEEGVFRVEYDDDMLGVEVIEAVADEFGVEDLTVAESTSILKELIPYSGILNLEGMHRPLLAVQLTQLKDGLAMGLAFNHGVLDGTSTWHFMSSWAEICSGSPSTTAQPFLERTKARNTRVKLDLSPPDASNGEPKPEPVLREKIFKFSEAAIDKMKSTVNEILPSDGSKPFSTFQALSSHIWRHVTHARDLKPEDYTVFTVFVDCRKRVDPPMPEAYFGNLIQGIFTVTAAGLLSAHPPQFGASLIQKAIEAHDAKAIDGRNKEWESAPKIFQFKDAGVNCVAVGSSPRFKVYDIDFGWGKPENVRSGTNNKFDGMIYLYPGKSGGRSIDVELTLEPEAMGRLEQDKEFLMEV. 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g03925 441 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 17 438 - -
Seca10g03925 441 Gene3D - 213 434 IPR023213 -
Seca10g03925 441 FunFam Tryptamine hydroxycinnamoyl transferase 215 435 - -
Seca10g03925 441 Pfam Transferase family 14 437 - -
Seca10g03925 441 Gene3D - 13 212 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g03925 Seca-Chr10 83165717 83169681 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g03925 13 441 Monolignol Biosynthesis Gene Families AT5G48930 27.093 2.46e-36 136
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g03925 K19747 - gmx:100790669 762.296
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g03925 10 83165717 83169681 Seca10g03925 10 83165717 83169681 ECH