Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g03920 ATGCTCTTCCACCTCCAGCAACCCGCCACACAATACAACTACGCGGCGGCGCCACAACCGCCGGTTCAAGTCCCTCCCGGCGCATACCCATACCCGCCGTCACAACAGCTATTCCAGAAGGTAGCGCAGACGATCATGCCGGAAGCCCTAGAGAACGTGAAGGCGGCGATCGACAACAGCGAGATCGAGCACAGGGCGGAGGCGAAGAAGAAGGCGGTTCCCCGGAAGGCCGCCGGCCAGTCATGGGAGGATCCTTCGCTGGCGGAGTGGCAGGAGAACGACCACCGTCTGTTCTGCAGCGATCTCCGAAACGAGGTAAACGACGGCGTTTTGTCAAAGGCGTTCTCGCGGTTCCCTTCTTTCAACATGGCCAGGGTCGTCAGGGACAAGCGCTCTGGGAAAACCAAAGGCTATGGATTCGTGAGCTTGGCAAATCCCTCGGATCTCGCTGTTGCGCTCAAAGAGATGAACGGAAAGTACGTTGGGAACCGACCTATCAAGCTTTGCAAGAGCAAGTGGAAGGAGAGAACAGATTACGACGCTTTGGGGAAGCAGAATAAGCAATCTAAGAAGAAAATCAAATCTTCCTAA 591 0.5584 MLFHLQQPATQYNYAAAPQPPVQVPPGAYPYPPSQQLFQKVAQTIMPEALENVKAAIDNSEIEHRAEAKKKAVPRKAAGQSWEDPSLAEWQENDHRLFCSDLRNEVNDGVLSKAFSRFPSFNMARVVRDKRSGKTKGYGFVSLANPSDLAVALKEMNGKYVGNRPIKLCKSKWKERTDYDALGKQNKQSKKKIKSS. 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g03920 196 FunFam RNA-binding protein 42 31 180 - -
Seca10g03920 196 SUPERFAMILY RNA-binding domain, RBD 79 177 IPR035979 GO:0003676
Seca10g03920 196 Gene3D - 36 169 IPR012677 -
Seca10g03920 196 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 95 173 IPR000504 GO:0003723
Seca10g03920 196 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 97 167 IPR000504 GO:0003723
Seca10g03920 196 CDD RRM_RBM42 89 171 IPR034215 -
Seca10g03920 196 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 33 188 - -
Seca10g03920 196 SMART rrm1_1 96 169 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g03920 Seca-Chr10 82854813 82855403 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g03920 97 183 Eukaryotic Initiation Factors Gene Family AT1G71770 29.885 3.94e-06 44.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g03920 K25079 - csav:115719182 261.536