Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g03890 ATGTCGTCGCCGGGGTTCACTGGCGGTGGTGGAGCATCGGAGTTTTTCGCCGGCAGATCCATTCCGGCGGCGATGGCGGCAACCTCCATGAACAACCCCATCACCACTCCTTCCGTCACCAACAACCACCTTCATACCTCTCTCTACCGAACCCAACACCAACACCAACAGCAACAACAACTCCCTCCAATCTTTCTAGATCCTTCTTCCCAGATTCTCCACCAGCGCCAAACACCAACCCTTAAGCGCACCCTAGCAGAATTCCAAACCCAACACCAACACCAACACAACCAAACCTTCAACAACAGCCTTAACCATAACAATCACCACGTCCTTTCAAGCCTTCTACTTCGTTCCGTGAAACCCAGAACAACTACAACTTTTCACCACACTTCTTCTCCTTTGGATTTTTCCGTTCCTGAATTACAAAACCCCTTGAGTTTTCATCAAACGCAGCGTTTAGGTGTGCCTTTGCTTCACCAACTTCGCCCTCAACCCATTAACCTCCCCAACAACGTGACTTTACCCATGACCAACACGATCCTCCCAAATAGTAATTTTCAATACCGGACCTCCAATTTGGGTCAGGCTCTGAACCGGGTTCAGACCGCTGAACCGGAAAAGAAGATCATGGACCAACGGCTTCAGGATTTGGAGAAGCAGCTTCTAGAAGATAACGACGAAGAGGGAGAAGCTGATGCAGCTTCTGTTATAACCACCAGCGAGTGGTCAGAGACGTATCAGAACCTGATCGGGTCGGGTCCGGCTCTGAATCAGAAACACGCTTCATCATCGCCAACTTCGTCTACAACGTCTTCGACTTCTTCTTCATCTTCTGCGGCTTCACCTGCTTCGGTGTGCTCCAAACAGACCCTAATGGAAGCCGCATCTGCAATCGCCGAAGGGAAAAACGACGTCGCAGCGGAGATCCTGGCCCGTTTGGCACAGGGTCCGAACCCGAACGGGAATTCGGATCAGCGGTTAACCGATTGCATGGTTTCGGCTCTGAAATCGCGGATGAACCCGGTGGAAAATCCTCCACCTGTGGCGGAGCTATTCGGCAGGGAACACGCTGAGTCAACTCAGTTGCTGCTTGAGAACTCGGTGTGCTTCAAGTTTGGTTTCATGGCTGCGAATCTCGCGATTATCGAAGCTGCATTTGAGGAGAACGCGAACTCGAACGTGAACGGGAAAGGGTTCTGCGTGGTGGATTTTGATATTGGACAGGGGAAGCAGTACATGCACCTCCTCCACGCGCTCTCTGCGCGTGGCCAGAACGGCAAGGTGATGCCGGCGGTGAAGATCGCGGCGATGGCGGATAACGGCGGCGAGGATAGGGTTAGAGCAGTGGGGGAGATGCTGAGTCGACAAGCGGAGAGGTTGAGGATCGGGTTCGAGTTTCGTGTGGTTCCAGTGACTCAGAAACTCACTGAGTTAACTCGCGAGTCGTTGGGTTGCGACCCAGATGAGGCCCTCGTGGTGAACTTCGCGTTCAAGCTGAATCGTATCCCAGATGAGAGCGTGTCAACAGAGAACCCACGCGACGAGCTTCTGAGGCGCGTGAAGAAACTCGCTCCGCGCGTGGTTACCATAGTGGAGCAAGATATGAACGTAAATACGGCGCCGTTTTTGGCTCGCGTGGCTGAGTCATGGTCTTATTACGGTGCTCTGTTCGACTCGGTTGAGTCCGTGTTGGGGAGGGACAATCCGGACCGAGTCAGGGTGGAGGAGGGACTGAGTCGGAAGGTATGTAACTCGTTGGCTTGTGAAGGAAGGGATCGCGTGGAACGCTGTGAAGTGTTTGGGAAATGGCGCGCACGCATGAGCATGGCGGGGTTCCAGCTGAAACCGCTGAGTCAAAACCTGGCCGAGTCAATTAAATCGCGACTCACCACAGGGAACAACCGAGTCAACTCGGGACTCACCGTGAAAGAAGAGAACGGTGGGATTTGCTTTGGTTGGATGAGAAGGACACTCACCGTCGCATCTGCTTGGCGTTAA 2001 0.5327 MSSPGFTGGGGASEFFAGRSIPAAMAATSMNNPITTPSVTNNHLHTSLYRTQHQHQQQQQLPPIFLDPSSQILHQRQTPTLKRTLAEFQTQHQHQHNQTFNNSLNHNNHHVLSSLLLRSVKPRTTTTFHHTSSPLDFSVPELQNPLSFHQTQRLGVPLLHQLRPQPINLPNNVTLPMTNTILPNSNFQYRTSNLGQALNRVQTAEPEKKIMDQRLQDLEKQLLEDNDEEGEADAASVITTSEWSETYQNLIGSGPALNQKHASSSPTSSTTSSTSSSSSAASPASVCSKQTLMEAASAIAEGKNDVAAEILARLAQGPNPNGNSDQRLTDCMVSALKSRMNPVENPPPVAELFGREHAESTQLLLENSVCFKFGFMAANLAIIEAAFEENANSNVNGKGFCVVDFDIGQGKQYMHLLHALSARGQNGKVMPAVKIAAMADNGGEDRVRAVGEMLSRQAERLRIGFEFRVVPVTQKLTELTRESLGCDPDEALVVNFAFKLNRIPDESVSTENPRDELLRRVKKLAPRVVTIVEQDMNVNTAPFLARVAESWSYYGALFDSVESVLGRDNPDRVRVEEGLSRKVCNSLACEGRDRVERCEVFGKWRARMSMAGFQLKPLSQNLAESIKSRLTTGNNRVNSGLTVKEENGGICFGWMRRTLTVASAWR. 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g03890 666 ProSiteProfiles GRAS family profile. 279 666 IPR005202 -
Seca10g03890 666 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 260 659 IPR005202 -
Seca10g03890 666 MobiDBLite consensus disorder prediction 252 285 - -
Seca10g03890 666 Pfam GRAS domain family 289 666 IPR005202 -
Seca10g03890 666 Coils Coil 208 228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g03890 Seca-Chr10 81569538 81571538 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g03890 54 666 GRAS Transcription Factor Family AT5G52510 48.967 4.34e-163 481
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Seca10g03890 GRAS 1.8e-96 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g03890 - - gmx:100788551 796.193
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g03890 10 81569538 81571538 Seca10g03890 10 81569538 81571538 ECH
Seca10g03890 10 81569538 81571538 Seca10g04143 10 92220597 92225577 PCT