Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g03885 ATGTTTTCCCCCTTTGGAAAGATCGTTTCTGAGGACTTCTTGTGGCACACTCGTGGCCCAAAACGTGGAGAACCTCGCGGTTTTGCGTTTATCCAGTATAGCACAAAAGAGGAAGCAGAATTGGCCAAGGAGAAAATGCATGGGAAGTTAGCTTGTGGCAGGCCATTGGTGGTTCGTCTTGCTAGTGAGAAGTACATGTTGGAAACAGCTGATAGCTCTACAAAAGCAACAGGTGAAGGACACAAGATGCATCTCACTGGTGGTGGCATGGGACAGACAAGTCGTAGTGCAAAAATAGCTGCAATAAAGAATAAATTGAAATCTTTAGAGGAGGAGAGCTCTAGGACCAAGAAGCAGAAGCAAAGTGACAATATTTCTTGA 381 0.4488 MFSPFGKIVSEDFLWHTRGPKRGEPRGFAFIQYSTKEEAELAKEKMHGKLACGRPLVVRLASEKYMLETADSSTKATGEGHKMHLTGGGMGQTSRSAKIAAIKNKLKSLEEESSRTKKQKQSDNIS. 127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g03885 126 Coils Coil 99 119 - -
Seca10g03885 126 Gene3D - 1 75 IPR012677 -
Seca10g03885 126 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1 63 IPR000504 GO:0003723
Seca10g03885 126 MobiDBLite consensus disorder prediction 71 126 - -
Seca10g03885 126 MobiDBLite consensus disorder prediction 104 119 - -
Seca10g03885 126 SUPERFAMILY RNA-binding domain, RBD 1 67 IPR035979 GO:0003676
Seca10g03885 126 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 20 119 - -
Seca10g03885 126 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1 56 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g03885 Seca-Chr10 81457659 81459871 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g03885 1 64 Eukaryotic Initiation Factors Gene Family AT3G16380 37.500 1.85e-08 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g03885 K24527 - gmx:100806572 233.802
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g03885 10 81457659 81459871 Seca10g03885 10 81457659 81459871 ECH