Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g03884 ATGGACACCCAAAAGCTAATTATACCTTTCATTCTTCTCCTTTTCACTCCCATCTCATTATCTTCTTTCACTCCCACAGATAACTACCTCCTCAACTGTGGATCACAGACCAATGCTTCCCTCTTCAACAGGCTCTTCATGGGTGATTCCACCAACCAAGGTTCAAATTTTCTCTCTGCAGACAAATCCATTTCCCTCACCAACCAAAACCCACCTCCAAATTTGCCTACTTTGTATCACACTGCAAGAGTTTTCACCAGCACAGGGAGCTACAGGTTCAGCATGAGGAAAAACGGTACCCACTTTGTTCGTTTTCATTTCTCACCATTTAAGGGTCAAGGTTTTGATCTAAAATCTGCAAACTTTAGTGTCTTGGTTGATGGGAATTTGGTTCTGAGCAATTTCAAGCCAAATAATGATGCACTTGTTAAAGAGTTTATTTTGAGGGTAGAGTCAAATTTGCTTGAAATTGTGGTTAGACCTGTGGCTGTGGGTGATTCTGGTTTTGGCTTTGTCAATGCTATAGAGGTGTTTACTGCTCCTGCTGATTTTGTTATAGATTATGGAGCTAGGTTGGTTGGTCCTTCTGGTGTTGAGGAGTACAAGAACCTTTCATCCCAGGTTTTAGAAACTATCCATAGGATTAATGTTGGAGGTGCAAAATTAACTCCTTTTAATGACACCCTTTGGAGGACTTGGATTCCTGATGAGGATTTTCTGGTTTTTAAGGATGCAGCTAAGGCTTCAGTGAGCACTCACACACCAAATTACCAGAAGGGTGGTGCAAGTAAAGAGATCGCGCCTGATAATGTTTATATGACTGCTCAAGAGATGAATAGGGATCATTCTAGTTTAGCTTCACAATTCAACATAACCTGGAATTTTCCAGTGGCACCTGGTGGTGTTAGACACTTGGTTCGGTTGCATTTCTGTGATATAGTTAGTCCTGTTCTTAATTTGCTCTACTTTGATGTGTATATCAATGGGTATTCTGCATATAAGGATCTTGATTTGTCATCCCTTACATTCCATATGCTTGCATCTCCAGTCTATGTGGATTTTGTTGCAGATTCTGATGATTCAGGTGTTATTCAAATAAGTGTTGGCCCTTCTGATCTTAGCAGTTCTATTAGGAAGAATGCCATACTGAATGGTGCAGAGATAATGAAACTGGTGGATGTTATGGATTCACATGTTGTTACTAGGAAGAAAAAGTTGTGGGTGTTGGTGGGTTCAATTGTTGGAGGAATTGTTGTTGTACTTTTAGTTATAGCTGCTTTTCTAGTTGCTCTTAAATGCAGGAAGAAAAACCCAAAACAAAGGACAATGGAAAGTGTAGGATGGACGCCTTTGCGTGTGTTTGGAGGAAGTTCACTTAGTAGAATGTCTGAAGGGACAGCTTTTCCATCTCCTGGATATTTTGGTTTGAGAATCCCTTTTGCTGATATACAATCAGCAACAAACAATTTTGATAGAAGTCTAATTATAGGGTCTGGTGGGTTTGGAATGGTTTACAAAGGGGTGCTGAGAGACAACATGAAGGTTGCAGTCAAGAGAGGCATGCCTGGATCCAGACAAGGCCTTCCAGAATTCCAGACTGAAATAACAATTTTGTCCAAAATTCGCCATCGCCATCTTGTTTCACTAGTTGGCTATTGTGAAGAAAATTCAGAAATGATACTTGTCTATGAGTATGTGGAGAAAGGTCCACTTAAAAAGCATCTATATGGATCAGCAGGATTTCAACCTTTGTCATGGAAGCAGCGTCTTGAGATATGCATTGGTGCAGCGAGAGGTCTCCACTATCTTCACACTGGTTTTGCACAAGGAATCATCCACCGTGACATTAAATCAACCAATATTCTGCTTGATGAAAATTATGTTGCCAAGGTTGCTGATTTTGGTCTTTCAAGATCTGGGCCTTGTATGAATGAAACCCATGTGAGTACTGGTGTGAAAGGTAGTTTTGGTTATCTTGATCCTGAGTATTTCCGAAGGCAGCAGCTTACAGATAAATCAGATGTTTATTCATTTGGGGTTGTGCTTTTTGAGGTTCTTTGTGCCAGATCTGCTGTTGATCCACAACTTGATAGGGAACAGGTGAATTTAGCAGAATGGGCACTTGAATGGCAGAAGAAGGACATGCTGGAGCATATTATTGATCCTTATCTTGTTGGGCAGATCAAGCAAAGCTCATTGAAGAAATTTGGTGAAACAGCAGAGAAATGTTTGGCTGAATATGGTGTTGACAGGCCAACAATGGGTGATGTATTATGGAATTTGGAATATTCACTTCAGCTCCAAGAAAGTGAGTCATATTCTGATAGTGGTGCTCATGGAGCAGTGAATGTGACAACTACAATAATTCCTGGGAATTCTTCTGGCAACATAAGAGCAGAGGGAGATTATGACAATAATTATTCAAACATAGGTGGTACCCAAGTTTTTTCCCAACTAATGACCAATGAAGGAAGATAG 2478 0.404 MDTQKLIIPFILLLFTPISLSSFTPTDNYLLNCGSQTNASLFNRLFMGDSTNQGSNFLSADKSISLTNQNPPPNLPTLYHTARVFTSTGSYRFSMRKNGTHFVRFHFSPFKGQGFDLKSANFSVLVDGNLVLSNFKPNNDALVKEFILRVESNLLEIVVRPVAVGDSGFGFVNAIEVFTAPADFVIDYGARLVGPSGVEEYKNLSSQVLETIHRINVGGAKLTPFNDTLWRTWIPDEDFLVFKDAAKASVSTHTPNYQKGGASKEIAPDNVYMTAQEMNRDHSSLASQFNITWNFPVAPGGVRHLVRLHFCDIVSPVLNLLYFDVYINGYSAYKDLDLSSLTFHMLASPVYVDFVADSDDSGVIQISVGPSDLSSSIRKNAILNGAEIMKLVDVMDSHVVTRKKKLWVLVGSIVGGIVVVLLVIAAFLVALKCRKKNPKQRTMESVGWTPLRVFGGSSLSRMSEGTAFPSPGYFGLRIPFADIQSATNNFDRSLIIGSGGFGMVYKGVLRDNMKVAVKRGMPGSRQGLPEFQTEITILSKIRHRHLVSLVGYCEENSEMILVYEYVEKGPLKKHLYGSAGFQPLSWKQRLEICIGAARGLHYLHTGFAQGIIHRDIKSTNILLDENYVAKVADFGLSRSGPCMNETHVSTGVKGSFGYLDPEYFRRQQLTDKSDVYSFGVVLFEVLCARSAVDPQLDREQVNLAEWALEWQKKDMLEHIIDPYLVGQIKQSSLKKFGETAEKCLAEYGVDRPTMGDVLWNLEYSLQLQESESYSDSGAHGAVNVTTTIIPGNSSGNIRAEGDYDNNYSNIGGTQVFSQLMTNEGR. 826
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g03884 825 ProSitePatterns Protein kinases ATP-binding region signature. 496 518 IPR017441 GO:0005524
Seca10g03884 825 Pfam Protein tyrosine and serine/threonine kinase 495 758 IPR001245 GO:0004672|GO:0006468
Seca10g03884 825 Gene3D - 28 182 - -
Seca10g03884 825 Gene3D - 208 392 - -
Seca10g03884 825 FunFam receptor-like protein kinase FERONIA 458 565 - -
Seca10g03884 825 ProSitePatterns Serine/Threonine protein kinases active-site signature. 611 623 IPR008271 GO:0004672|GO:0006468
Seca10g03884 825 FunFam Receptor-like protein kinase FERONIA 208 393 - -
Seca10g03884 825 PANTHER OS07G0166700 PROTEIN 477 768 IPR045272 GO:0004714|GO:0006468
Seca10g03884 825 SUPERFAMILY Protein kinase-like (PK-like) 474 759 IPR011009 -
Seca10g03884 825 ProSiteProfiles Protein kinase domain profile. 490 764 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g03884 825 SMART serkin_6 490 764 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g03884 825 FunFam Receptor-like protein kinase FERONIA 566 778 - -
Seca10g03884 825 Gene3D Phosphorylase Kinase; domain 1 462 565 - -
Seca10g03884 825 Pfam Malectin-like domain 31 390 IPR024788 -
Seca10g03884 825 CDD STKc_IRAK 496 762 - -
Seca10g03884 825 FunFam Putative receptor-like protein kinase 28 181 - -
Seca10g03884 825 Gene3D Transferase(Phosphotransferase) domain 1 566 783 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g03884 Seca-Chr10 81416651 81419128 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g03884 10 825 Receptor kinase-like Gene Family AT3G46290 48.992 0.0 738
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Seca10g03884 Malectin_like 2.4e-31 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g03884 - - gmx:100787484 1367.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g03884 10 81416651 81419128 Seca10g03884 10 81416651 81419128 PCT