LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca10g03876	ATGGCCCCCACGTATACAAACCACCTCCATTCTAATGTTTACACACACAACACAAAGCTGTGGCCTCTGTTCTTCCTCCTTTTTATACCTCCACTCCAAACCTTTCCTCTTCACACACATAAACCCTCTCTCTCAAAAGCACACTTTCCACAACTAGAAACACAAACACACTCTTCCCAATTTTTCAAGTACACTTTGGCTATGGCGGCAGGACTCTCCGCCACCATAACCTTGAAGCCCCTCTTTCGTCTCCACCACCAACCCTTGTTCCCCCTCCTCCCCAAGTCAAATTCATCACTACCCCTTTCCCCTTTAAGATGTTTCCATCGCAGCACAACCCTTCGAAGAACCCAAAGAATGACTAGCTTCACCGTTTGTGTCCTCATGGAGGATCCAAAACAGGGCACCCACATGGAAACTGAGGTAAAAGAAGAGCCTTCCCTTCAAGGGAATTATCCTCAAGTTGTTTCAGCACGATTGGCAGAGAAATTGGCCAGAAAGAAGTCTGAGAGGTTCACTTACCTCGTTGCAGCAGTGATGTCTAGCTTTGGAATCACATCCATGGCAGTGTTGTCTGTTTATTATAGATTCTCATGGCAAATGGAGGGTGGAGAAGTTCCTTGGTCTGAAATGTTTGGCACATTTGCTCTATCAGTGGGTGCTGCTGTGGGTATGGAGTTTTGGGCTAGATGGGCTCACAAGGTTCTCTGGCATGCTTCCTTATGGCACATGCATGAGTCCCACCATAGACCGAGAGAAGGACCCTTCGAGCTAAACGATGTTTTCGCAATAATCAACGCTGTCCCTGCTATCGCTCTCCTTTCCTATGGTTTCTTCCACAAGGGACTGGTCCCTGGCCTCTGCTTCGGTGCGGGTCTTGGAATTACAGTGTTTGGTATGGCCTACATGTTTGTACACGATGGGTTGGTTCATAAGAGATTCCCAGTGGGCCCCATTGCTGACGTGCCCTACTTCAGAAGGGTAGCTGCTGCTCACAAACTTCACCATTCGGACAAATTCCAAGGTGTGCCATATGGGCTGTTTTTGGGACCAAAGGTAAGGGCTACATTCTTTGTTTCCAGATCTTGTCCTTATTCTATTTTTTATAAAAAAAATAAAGTATGTGTTTTAATTGTTAAATTAATTTTAATCTTCTAA	1158	0.4577	MAPTYTNHLHSNVYTHNTKLWPLFFLLFIPPLQTFPLHTHKPSLSKAHFPQLETQTHSSQFFKYTLAMAAGLSATITLKPLFRLHHQPLFPLLPKSNSSLPLSPLRCFHRSTTLRRTQRMTSFTVCVLMEDPKQGTHMETEVKEEPSLQGNYPQVVSARLAEKLARKKSERFTYLVAAVMSSFGITSMAVLSVYYRFSWQMEGGEVPWSEMFGTFALSVGAAVGMEFWARWAHKVLWHASLWHMHESHHRPREGPFELNDVFAIINAVPAIALLSYGFFHKGLVPGLCFGAGLGITVFGMAYMFVHDGLVHKRFPVGPIADVPYFRRVAAAHKLHHSDKFQGVPYGLFLGPKVRATFFVSRSCPYSIFYKKNKVCVLIVKLILIF.	386

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca10g03876	385	PANTHER	BETA-CAROTENE 3-HYDROXYLASE 1, CHLOROPLASTIC	102	353	IPR045019	GO:0016491
	Seca10g03876	385	Pfam	Fatty acid hydroxylase	221	348	IPR006694	GO:0005506\|GO:0008610\|GO:0016491

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca10g03876	Seca-Chr10	81180516	81183103	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca10g03876	68	291	Chloroplast and Mitochondria Gene Families	AT4G25700	62.009	1.75e-91	273

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca10g03876	K15746		-	gmx:100785541	458.759

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Seca10g03876	10	81180516	81183103	Seca10g03876	10	81180516	81183103	ECH
	Seca10g03876	10	81180516	81183103	Seca10g03876	10	81180516	81183103	PCT

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