Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g03876 ATGGCCCCCACGTATACAAACCACCTCCATTCTAATGTTTACACACACAACACAAAGCTGTGGCCTCTGTTCTTCCTCCTTTTTATACCTCCACTCCAAACCTTTCCTCTTCACACACATAAACCCTCTCTCTCAAAAGCACACTTTCCACAACTAGAAACACAAACACACTCTTCCCAATTTTTCAAGTACACTTTGGCTATGGCGGCAGGACTCTCCGCCACCATAACCTTGAAGCCCCTCTTTCGTCTCCACCACCAACCCTTGTTCCCCCTCCTCCCCAAGTCAAATTCATCACTACCCCTTTCCCCTTTAAGATGTTTCCATCGCAGCACAACCCTTCGAAGAACCCAAAGAATGACTAGCTTCACCGTTTGTGTCCTCATGGAGGATCCAAAACAGGGCACCCACATGGAAACTGAGGTAAAAGAAGAGCCTTCCCTTCAAGGGAATTATCCTCAAGTTGTTTCAGCACGATTGGCAGAGAAATTGGCCAGAAAGAAGTCTGAGAGGTTCACTTACCTCGTTGCAGCAGTGATGTCTAGCTTTGGAATCACATCCATGGCAGTGTTGTCTGTTTATTATAGATTCTCATGGCAAATGGAGGGTGGAGAAGTTCCTTGGTCTGAAATGTTTGGCACATTTGCTCTATCAGTGGGTGCTGCTGTGGGTATGGAGTTTTGGGCTAGATGGGCTCACAAGGTTCTCTGGCATGCTTCCTTATGGCACATGCATGAGTCCCACCATAGACCGAGAGAAGGACCCTTCGAGCTAAACGATGTTTTCGCAATAATCAACGCTGTCCCTGCTATCGCTCTCCTTTCCTATGGTTTCTTCCACAAGGGACTGGTCCCTGGCCTCTGCTTCGGTGCGGGTCTTGGAATTACAGTGTTTGGTATGGCCTACATGTTTGTACACGATGGGTTGGTTCATAAGAGATTCCCAGTGGGCCCCATTGCTGACGTGCCCTACTTCAGAAGGGTAGCTGCTGCTCACAAACTTCACCATTCGGACAAATTCCAAGGTGTGCCATATGGGCTGTTTTTGGGACCAAAGGTAAGGGCTACATTCTTTGTTTCCAGATCTTGTCCTTATTCTATTTTTTATAAAAAAAATAAAGTATGTGTTTTAATTGTTAAATTAATTTTAATCTTCTAA 1158 0.4577 MAPTYTNHLHSNVYTHNTKLWPLFFLLFIPPLQTFPLHTHKPSLSKAHFPQLETQTHSSQFFKYTLAMAAGLSATITLKPLFRLHHQPLFPLLPKSNSSLPLSPLRCFHRSTTLRRTQRMTSFTVCVLMEDPKQGTHMETEVKEEPSLQGNYPQVVSARLAEKLARKKSERFTYLVAAVMSSFGITSMAVLSVYYRFSWQMEGGEVPWSEMFGTFALSVGAAVGMEFWARWAHKVLWHASLWHMHESHHRPREGPFELNDVFAIINAVPAIALLSYGFFHKGLVPGLCFGAGLGITVFGMAYMFVHDGLVHKRFPVGPIADVPYFRRVAAAHKLHHSDKFQGVPYGLFLGPKVRATFFVSRSCPYSIFYKKNKVCVLIVKLILIF. 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g03876 385 PANTHER BETA-CAROTENE 3-HYDROXYLASE 1, CHLOROPLASTIC 102 353 IPR045019 GO:0016491
Seca10g03876 385 Pfam Fatty acid hydroxylase 221 348 IPR006694 GO:0005506|GO:0008610|GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g03876 Seca-Chr10 81180516 81183103 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g03876 68 291 Chloroplast and Mitochondria Gene Families AT4G25700 62.009 1.75e-91 273
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g03876 K15746 - gmx:100785541 458.759
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g03876 10 81180516 81183103 Seca10g03876 10 81180516 81183103 ECH
Seca10g03876 10 81180516 81183103 Seca10g03876 10 81180516 81183103 PCT