Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g03874 ATGTCACCAAATGCATCATCATTGTCAATCATGAAACAAAAGCTCTCATTTTCAACCCCATTCCTTGGTATCCCATTATGGGTTTTGCTACTAGCTTCCACTGCAGCATTCATTGTTGCAGCATGTGTCATCATGTGTGTTTGCTTCACCTACTGTCATCGTAAAAAATCCTATAAGCCCCGTTTTTCATTACCCAAATCAATAGCATGCAAGCACTACCGTGGTGTTTTTGGTTCTTCCTCCCTTGACAGGGGGTTACTATCAGCATCAAGCAATGTCTCAGAATTTGAGATAAACTTTGACAAGTTATCAGTATCAGGTCATCATGAGTTGTTCCAACCTGGCCAGTTTTATCCAAAGGTTAATATCATTAAAAAAGATGAATTTTTGAAAGGTTTTGAATCAAGTGGTAAGCTCTCTCCTGTTGCCAAGGATGTGAAGAGGGAGTTCTATTTTAGCCTTAAGGAGATAGAGGATGCTACAAATGGATTGGCTCAAGAAAATATCATTGGAAGTGGGGATAATGGGATTGTTTATCTTGGTTTGTTGCCAAATAATAGGAGGGTGGCAGTGAAGAAACTAGTTTGTGACAGTCGCCAACCTGAGGAATATTTTGCAAATCAAATGGAGGCAATTGGACGTGTAAAGCACGAGATGCTGGTTAAATTGCTTGGATATTGTACTGATGGTGCTTACAGGTATAAACTAGTTTTATCTGAAACCAAAGAAGCCTCCTCTCTCAGGATGTCAGTAACTGAATATGTAGATAATGGAAATCTGCATTATTGGCTTCATGAGTTTCCTGGACTAGTCAGCCCTCTAACATGGACTATAAGATTAAGCATAATCCATGGTGTGGCAAAAGGACTGGCATATCTTCATGAGGAAGTAGAACCAAAGATTCTCCATGGCAACATAAAATCCAGCAATATATTGTTTGACCATCAATGGAATCCAAAGATATCTGACTTTGGTCTTGTTAAGCTTCTCAGTCCTGAATGGAGTCACATTATAATGGAAACATTGGGCTGCTCCAGTTATGTAGCTCCAGATTGTCATTCTACTAGTACCTTCACTGAGGGTAATGACATTTATGGTTTTGGAGTACTTATCATGGAGATTATATCAGGGAGGATGGCTTTAAATCACAGTCAACCCCAGGTACCAGCTCATATAGTAGACTGGTTCAAATCAATGATTTCCAATGGAAAGATTTCTTATGTGGTGGATCCAAAATTGCCTGAAATTCCTCCTTCCAAGGAACTTAAACGATTTATTTTAGTTGCTCTAAGATGTGTGGATCCTGATGTGAATCCTAGAATTAAAATGGGAGATGTGGTTCACATGCTTGAGTCCAACTTACTTCTTTTTGATGAACACCAAATTGCCATGGAGCCTTGTGAACACAATCACTCTCCACAAAGTCAGAAGGATTAG 1437 0.3932 MSPNASSLSIMKQKLSFSTPFLGIPLWVLLLASTAAFIVAACVIMCVCFTYCHRKKSYKPRFSLPKSIACKHYRGVFGSSSLDRGLLSASSNVSEFEINFDKLSVSGHHELFQPGQFYPKVNIIKKDEFLKGFESSGKLSPVAKDVKREFYFSLKEIEDATNGLAQENIIGSGDNGIVYLGLLPNNRRVAVKKLVCDSRQPEEYFANQMEAIGRVKHEMLVKLLGYCTDGAYRYKLVLSETKEASSLRMSVTEYVDNGNLHYWLHEFPGLVSPLTWTIRLSIIHGVAKGLAYLHEEVEPKILHGNIKSSNILFDHQWNPKISDFGLVKLLSPEWSHIIMETLGCSSYVAPDCHSTSTFTEGNDIYGFGVLIMEIISGRMALNHSQPQVPAHIVDWFKSMISNGKISYVVDPKLPEIPPSKELKRFILVALRCVDPDVNPRIKMGDVVHMLESNLLLFDEHQIAMEPCEHNHSPQSQKD. 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g03874 478 Gene3D Phosphorylase Kinase; domain 1 130 238 - -
Seca10g03874 478 FunFam Putative receptor-like serine/threonine-protein kinase 255 464 - -
Seca10g03874 478 SUPERFAMILY Protein kinase-like (PK-like) 149 462 IPR011009 -
Seca10g03874 478 PANTHER OS01G0323000 PROTEIN 9 463 - -
Seca10g03874 478 Pfam Protein kinase domain 166 447 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g03874 478 Gene3D Transferase(Phosphotransferase) domain 1 255 463 - -
Seca10g03874 478 ProSiteProfiles Protein kinase domain profile. 164 456 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g03874 478 ProSitePatterns Protein kinases ATP-binding region signature. 170 193 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g03874 Seca-Chr10 81116286 81119046 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g03874 152 453 Receptor kinase-like Gene Family AT2G48010 37.086 5.04e-60 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Seca10g03874 Pkinase 2.1e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g03874 - - vra:106762086 578.556