Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g03871 ATGGAGGCTTCAACAAATTCCAATATGAAGAAGCCTAGGTCGGAAATGGATGTTGATCCTGATGATCCAAAAACATGGTACATGCCTCGGTGGCAGTTTCTGGAGTATGATCCTCGAGTGGAATATAGACATACTATCACTTATATCCCAGAGGATATTATTCCTGGATATCGTGAAAGTGGTCCTGCTGATGTGCACTATTTTGATAAAACAATGACTGAAATGCATGCTAATGGTAGCACACTGAACCTTCCAACTGCCCTTTGTGAAAGATTTAGAACAAAGATAACCTCTGTTGTGTTGAGGGATGATAATGGTGTTGTCTTTCCTATCAATTTGTCTTGGTCAAGGAATGGAAAGGTTGCATATATCACAAAGGGATGGAAACCATTTAGTATGCAAAAAAAATTGAAGAAGGATTTAGTGGTTTGTTTCAGAGTTAACATTGTTGATTGCCAAATCATTCATACTAGGGTTCTATGTTAA 486 0.3807 MEASTNSNMKKPRSEMDVDPDDPKTWYMPRWQFLEYDPRVEYRHTITYIPEDIIPGYRESGPADVHYFDKTMTEMHANGSTLNLPTALCERFRTKITSVVLRDDNGVVFPINLSWSRNGKVAYITKGWKPFSMQKKLKKDLVVCFRVNIVDCQIIHTRVLC. 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g03871 161 MobiDBLite consensus disorder prediction 1 21 - -
Seca10g03871 161 CDD B3_DNA 66 146 IPR003340 GO:0003677
Seca10g03871 161 Gene3D - 58 159 IPR015300 -
Seca10g03871 161 Pfam B3 DNA binding domain 68 147 IPR003340 GO:0003677
Seca10g03871 161 SUPERFAMILY DNA-binding pseudobarrel domain 64 147 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g03871 Seca-Chr10 81034369 81038950 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Seca10g03871 B3 5.9e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g03871 - K17341 csin:114264623 39.6614