Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g03869 ATGGAGGCTTCAACAAATTCCCGTATGAAGAAGCCTAGGTCGGAAATGAATGTTGATCTTGATGATCCAAAAACATGGTACATGCCTCGATGGCAGTTTCTGGAGTATGATCCTCAAGTGGGATTTTGCAGAGCTGCTGCTCAGTTTGCCAAGGACTTTTGGGACATTGTTCCTAGGCGGGTTCATTTTATTGACGGTATTGGAAACAATATCAATGTTGTTGTGCGAAGAGATGTTGACACCATGTACTTTACTCATGGTTGGCCTTTGCTGAAAGATGTTTATGATCTTGATGATGGAGGCTGGATTAAGCTTTTTTATCATGACAAAGATGTTTTCAAGATTTTTGTGTTTGATAGGGAATTTATTCAGGTTCATTTGCCTATTCCTCCAAAAGAATATGAACTTACTGTCACTTATCTGCCGGAGGATATTATTCCTGGATATCGTGAAAGTGATCTTGCTGATGTGCATTATTTTGATAAAATATTGACTAAAATGCATGCTAATCGTAACATACTGAACCTTCCAACTGCCCTTTGTGAAAGATTTAGAACAAAGATAACCTCTGCTATGTTGAGGGACGATAATGGTGGTGTCTTTCCTGTCAATCTGTCTTGGTCAAGGTCTGGAAAGGTTGCATATATCACAAAGGGTTGGAAACAGTTTAGTATGCAAAAAAATTTGAAGAAGGATTCAGTGGTTCGTTTCAGAGTTGACACTGCTGATTGCCAAGTCATTCATACTAGGGTTATAAGTTAA 762 0.3871 MEASTNSRMKKPRSEMNVDLDDPKTWYMPRWQFLEYDPQVGFCRAAAQFAKDFWDIVPRRVHFIDGIGNNINVVVRRDVDTMYFTHGWPLLKDVYDLDDGGWIKLFYHDKDVFKIFVFDREFIQVHLPIPPKEYELTVTYLPEDIIPGYRESDLADVHYFDKILTKMHANRNILNLPTALCERFRTKITSAMLRDDNGGVFPVNLSWSRSGKVAYITKGWKQFSMQKNLKKDSVVRFRVDTADCQVIHTRVIS. 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g03869 253 Gene3D - 151 253 IPR015300 -
Seca10g03869 253 SMART B3_2 160 253 IPR003340 GO:0003677
Seca10g03869 253 SUPERFAMILY DNA-binding pseudobarrel domain 47 120 IPR015300 -
Seca10g03869 253 Pfam B3 DNA binding domain 160 245 IPR003340 GO:0003677
Seca10g03869 253 SUPERFAMILY DNA-binding pseudobarrel domain 156 247 IPR015300 -
Seca10g03869 253 CDD B3_DNA 158 238 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g03869 Seca-Chr10 80989082 80990453 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Seca10g03869 B3 2.7e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g03869 - K09287 tpra:123886137 53.5286